Pharmaceutical Chemist | Biologist | Bioinformatics Researcher
PhD Candidate in Integrative Biology at Cinvestav
🔬 Multi-omics meets fungal biology: decoding cytokinin signaling in Trichoderma atroviride

"Pursue excellence, and success will follow."

I work at the intersection of experimental biology, bioinformatics, and data science, specializing in:

• 🌱 Fungal Development & Hormone Signaling
  Multi-omics analysis of cytokinin signaling during fungal germination and morphogenesis.

• 🧬 Functional & Comparative Genomics
  Mining gene families and adaptive traits in fungi and extremophiles.

• 🌿 Microbial Ecology & Metagenomics
  Profiling soil and gut microbiomes using high-throughput sequencing and diversity metrics.

• 🔁 Reproducible Data Science
  Developing pipelines for RNA-seq, metagenomics, and genome annotation.

• Cytokinin-responsive transcriptomics in T. atroviride (Cinvestav)
• BioCode Academy
  📘 Bioinformatics Education Platform — Plataforma educativa dicada a la formación en bioinformática, desde conceptos básicos hasta análisis avanzados

• 🧄 Stromatinia cepivora Transcriptomics – UG
  Dr. Patricia Ponce Noyola & Dr. Alberto Flores Martínez

• 🧬 CAMDA 2024/2025: Gut Microbiome Challenge – UNAM
  Dr. Nelly Sélem Mojica & Dr. Shaday Guerrero Flores

• 🌾 Rhizosphere Metagenomics – UNAM
  Dr. Nelly Sélem Mojica, Dr. Shaday Guerrero Flores, & Dr. Haydeé Peruyero

• 🔬 Prauserella Genome Mining – UNAM & US
  Dr. Nelly Sélem Mojica & Dr. Paulina Corral Villa

Genomics Transcriptomics Metagenomics Genome Mining Protein modeling Sequence analysis Phylogenetic analysis R Bioconductor Python Shell Git/GitHub Docker

Fungal Genetics PCR RT-PCR qPCP dPCR Microscopy Protein Purification Cloning Heterologous Expression Antibody Production

• 🎓 PhD in Integrative Biology – Cinvestav (Ongoing)
  Cytokinin signaling in T. atroviride, Dr. Alfredo Herrera Estrella's lab

• 🎓 MSc in Biological Sciences – Universidad de Guanajuato
  Transcriptomics in Sclerotium cepivorum, graduated with highest honors

• 🎓 BSc in Pharmaceutical Chemistry and Biology – Universidad de Guanajuato
  Graduated with distinction

• 🎓 Mentor and instructor in molecular biology, chemistry, and bioinformatics
• 📘 Workshop co-instructor in Transcriptomic, Metagenomic, Genome mining, and statistics with R
• 🧪 Active contributor to academic seminars and open-science education

• García-Estrada et al. (2024)
  Diversity of bacterial communities in wetlands of Calakmul Biosphere Reserve: a comparative analysis between conserved and semi-urbanized zones in pre-Mayan Train era.
  BMC Microbiology 24, 376

• 📧 [email protected]
• 🐦 @DavidAlbertoGE
• 🔗 LinkedIn
• 🔬 ResearchGate

• 🪵 Weekend woodworker
• 🍳 Experimental chef