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A possible improvement in segmentation speed would be to use ParDNAcopy to parallelize the actual CBS.
Pros:
- Gets things done quicker (always a plus)
- Setting a random seed (in
ParDNAcopy::parSegment
) allows more reproducible resutls
Cons:
- One more dependency
- No more updates since 2014 (it's not like DNAcopy got much love either, though)
Again, if this is deemed worthwhile I'm willing to actually implement that.
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