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@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

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  1. ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 4 1

  2. illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 3 1

  3. mpxv-artic-nf Public

    Nextflow 2 4

  4. covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 5

Repositories

Showing 10 of 123 repositories
  • auto-pangolin Public

    Automated lineage assignment of SARS-CoV-2 sequences with pangolin

    Python 0 0 0 0 Updated Apr 16, 2025
  • auto-ncov Public

    Automated genomic analysis of SARS-CoV-2 sequence data

    Python 1 0 3 0 Updated Apr 16, 2025
  • ncov2019-artic-nf Public Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 4 88 4 0 Updated Apr 16, 2025
  • auto-tb-amr-amplicon Public
    Python 0 0 0 0 Updated Apr 16, 2025
  • auto-cpo Public

    Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)

    Python 0 GPL-3.0 0 5 0 Updated Apr 16, 2025
  • auto-routine-sequence-qc Public
    Python 0 0 0 0 Updated Apr 16, 2025
  • routine-sequence-qc Public

    Pipeline for running routine quality control analyses on illumina sequence data

    Python 1 3 8 0 Updated Apr 16, 2025
  • plasmid-assembly Public
    Nextflow 0 MIT 0 3 1 Updated Apr 15, 2025
  • cluster-plasmids Public

    A workflow for assessing similarity between a set of plasmid sequences

    Nextflow 0 MIT 0 0 0 Updated Apr 11, 2025
  • cpo-results-collector Public
    Python 0 0 2 0 Updated Apr 9, 2025
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