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If extracting pandas from the former is too difficult then I propse a microservice for this instead (or propose an API as an option anyway and a good use-case for a new service on the new org).
Where one can:
Parse samplesheets from Json to CSV and vice versa
Validate a samplesheet, given a samplesheet and a mocked up RunInfo.xml file, run a validation which then runs bclconvert --validate-samplesheet-only.
There are a few scenarios that could find this useful.
The samplesheet checker that needs to return a v2 samplesheet
The samplesheet checker that should valdiate a v2 samplesheet with bclconvert --validate-samplesheet-only
The sequence run manager that stores the samplesheet in JSON format.
ctTSOv2 service that needs to make a samplesheet in order to run the workflow
The text was updated successfully, but these errors were encountered:
Pull these into one repository seems great.
Currently 'v2-samplesheet-parser' is also use the Section Classes from 'v2-samplesheet-maker'. We can keep these settings and tools consistency after combination.
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Realising that we now have:
Would rather pull these into one repository.
If extracting pandas from the former is too difficult then I propse a microservice for this instead (or propose an API as an option anyway and a good use-case for a new service on the new org).
Where one can:
bclconvert --validate-samplesheet-only
.There are a few scenarios that could find this useful.
bclconvert --validate-samplesheet-only
The text was updated successfully, but these errors were encountered: