Skip to content

Add in analysis generator service #907

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
alexiswl opened this issue Mar 17, 2025 · 0 comments
Open

Add in analysis generator service #907

alexiswl opened this issue Mar 17, 2025 · 0 comments
Assignees

Comments

@alexiswl
Copy link
Member

New refactors in #906, #870, #871 and #789 mean that we can now 'initialise' analyses before we even have Fastqs!

The earliest we can possibly do this is once the SRM generates the samplesheet and the fastq glue has registered the fastqs in the database.

We need a small service that can take a 'instrument run id fully initialised' event from the fastq glue service and then generate ALL the possible analyses available in that instrument run id, this is possible by taking all the non-wgts-tumor libraries in the instrument run id and then generating analysis events for each of them. For wgts-tumor libraries, we perform pairing first with any libraries that match the subject id of libraries inside the samplesheet.

There are four types of analysis to generate:

  • WGTS DNA Analysis
  • WGTS RNA Analysis
  • WGTS DNA-RNA Analysis
  • ctDNA Analysis
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant