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Is your feature request related to a problem? Please describe.
In the tutorial Loading ImageJ ROI Sets it's unclear how to get/generate the ROI.zip file.
The explanation for ImageJ seems quite clear, but it's not clear what image to use for that specific task. I also looked for the image in ~/.starfish/cache but could not find any pointer to the MERFISH data (which I assume is the one needed for the tutorial). This is also related to the assigning spot to cells tutorial
Describe the solution you'd like
either include ROI in starfish.data or better explanation how to generate the files.
In order to preserve the ability for readthedocs to render example gallery in the future (#1865), we chose to comment out the code that downloads RoiSet.zip from github.
Is your feature request related to a problem? Please describe.
In the tutorial Loading ImageJ ROI Sets it's unclear how to get/generate the ROI.zip file.
The explanation for ImageJ seems quite clear, but it's not clear what image to use for that specific task. I also looked for the image in
~/.starfish/cache
but could not find any pointer to the MERFISH data (which I assume is the one needed for the tutorial). This is also related to the assigning spot to cells tutorialDescribe the solution you'd like
either include ROI in
starfish.data
or better explanation how to generate the files.Describe alternatives you've considered
Additional context
This issue references the JOSS submission openjournals/joss-reviews#2440
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