We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
There was an error while loading. Please reload this page.
1 parent ba73e79 commit 613b926Copy full SHA for 613b926
setup_creators/solutions/05_Snakefile_target
@@ -1,5 +1,5 @@
1
# our samples are pre-configured
2
-SAMPLES = ["A", "B"]
+samples = ["A", "B"]
3
4
rule all:
5
input:
@@ -37,8 +37,8 @@ rule samtools_index:
37
rule bcftools_call:
38
39
fa="data/genome.fa",
40
- bam=expand("sorted_reads/{sample}.bam", sample=SAMPLES),
41
- bai=expand("sorted_reads/{sample}.bam.bai", sample=SAMPLES)
+ bam=expand("sorted_reads/{sample}.bam", sample=samples),
+ bai=expand("sorted_reads/{sample}.bam.bai", sample=samples)
42
output:
43
"calls/all.vcf"
44
shell:
0 commit comments