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fix: SAMPLES -> samples
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setup_creators/solutions/05_Snakefile_target

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
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# our samples are pre-configured
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SAMPLES = ["A", "B"]
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samples = ["A", "B"]
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rule all:
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input:
@@ -37,8 +37,8 @@ rule samtools_index:
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rule bcftools_call:
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input:
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fa="data/genome.fa",
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bam=expand("sorted_reads/{sample}.bam", sample=SAMPLES),
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bai=expand("sorted_reads/{sample}.bam.bai", sample=SAMPLES)
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bam=expand("sorted_reads/{sample}.bam", sample=samples),
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bai=expand("sorted_reads/{sample}.bam.bai", sample=samples)
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output:
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"calls/all.vcf"
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shell:

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