biotestmine_on_mac

== POSTGRES ==
download and install (correct version for you os) of postgres

see https://postgresapp.com/
and 
http://postgresguide.com/

echo /Applications/Postgres.app/Contents/Versions/latest/bin | sudo tee /etc/paths.d/postgresapp

psql

sergio=# create user modmine with password 'modmine';

sergio=# create database biotestmine;

sergio=# grant all privileges on database biotestmine to modmine;

sergio=# create database "items-biotestmine";
CREATE DATABASE
sergio=# grant all privileges on database "items-biotestmine" to modmine;
GRANT

sergio=# alter user modmine with createdb;
ALTER ROLE

now you can
sergio$ psql -U modmine -d biotestmine

== SOLR ==
curl -O http://archive.apache.org/dist/lucene/solr/7.2.1/solr-7.2.1.zip

follow
https://github.com/intermine/biotestmine/wiki

== BUILD ==

git clone https://github.com/intermine/biotestmine
export GRADLE_OPTS="-Dorg.gradle.daemon=false"

on mac:
sed -i '' 's/DATA\_DIR/\/Users\/sergio\/data/g' project.xml

rather than
sed -i  's/DATA\_DIR/\/Users\/sergio\/data/g' project.xml

TODO: correct doc
https://intermine.readthedocs.io/en/latest/get-started/tutorial/

curl -O  https://raw.githubusercontent.com/intermine/intermine-scripts/master/project_build
chmod +x project_build
./project_build -b -v localhost ~/biotestmine-dump

-- if no PERL: --

sudo perl -e shell -MCPAN

then
install XML::Parser
install XML::Parser::PerlSAX

exit

== TOMCAT ==

in tomcat dir edit files as describe in docs

nano conf/tomcat-users.xml
nano conf/context.xml 
nano conf/server.xml 
nano bin/startup.sh

then 
./bin/startup.sh

== WEBAPP ==

-- only once
createdb -U modmine userprofile-biotestmine
./gradlew buildUserDB

-- first time
./gradlew cargoDeployRemote

-- after
./gradlew cargoReDeployRemote