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XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (57 seqs) #62

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HynnSpylor opened this issue May 16, 2023 · 5 comments
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@HynnSpylor
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HynnSpylor commented May 16, 2023

Defining mutations: XBB.1.9.1>C3511T>A22206T(S:D215V)
GISAID query: Spike_D215V, C3511T
Earliest seq: 2023-04-25 (Sichuan Province, China, EPI_ISL_17637501)
Most recent seq: 2023-05-04 (Hubei Province, China, EPI_ISL_17645470)
Countries detected: China (10, Hubei Province 3, Sichuan Province 3, Shanghai Municipality 2, Gansu Province 1, Heilongjiang Province 1)

Usher Tree:
QQ截图20230516100523
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_89cc_2e1b40.json
A very new sublineage, and it is widely distributed - Heilongjiang is in northeastern China while Sichuan in southwestern China.
Nowadays XBB.1.9.1 is the dominant sublineage in China, and we may keep monitoring.

Genomes:
EPI_ISL_17625358, EPI_ISL_17625461, EPI_ISL_17625620, EPI_ISL_17637501, EPI_ISL_17645399, EPI_ISL_17645402, EPI_ISL_17645453, EPI_ISL_17645470, EPI_ISL_17645642, EPI_ISL_17652398

@HynnSpylor
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16seqs now (Sichuan Province: 6 seqs)

@FedeGueli FedeGueli added the To be proposed Green light for proposal label May 16, 2023
@FedeGueli
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clearly recent one with a significative early spread, known residue mutated in fast lineages, localized in a country with pandemic peculiar dynamics so i think it is better monitoring it officially in the pango page.

@FedeGueli FedeGueli changed the title XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (10 seqs) XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (16 seqs) May 16, 2023
@HynnSpylor
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22 seqs now (6 more seqs from Hubei Province). I’ll move it to main page if reaches 50 or an abroad sample is detected

@HynnSpylor HynnSpylor changed the title XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (16 seqs) XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (22 seqs) May 17, 2023
@HynnSpylor
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It expands strikingly in China and reaches 57. I’ll move it to main page.

@HynnSpylor HynnSpylor changed the title XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (22 seqs) XBB.1.9.1 sublineage with S:D215V (A22206T) emerged in China (57 seqs) May 19, 2023
@FedeGueli
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Good job. put the link at the issue then . i ll close this after that

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