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NY.3+Orf1a:T4311I+S:K444R(7 seqs, 6 places, 6 with S:A475V) #2615

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xz-keg opened this issue May 19, 2025 · 6 comments
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NY.3+Orf1a:T4311I+S:K444R(7 seqs, 6 places, 6 with S:A475V) #2615

xz-keg opened this issue May 19, 2025 · 6 comments

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@xz-keg
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xz-keg commented May 19, 2025

Originally found by by @cvejris in #2199

NY.3 >> T1459C, C22498T, S:K444R (A22893G)
Query: T1459C, C22498T, A22893G

NY.3+C13197T(Orf1a:T4311I)+C22498T+T1459C+A22893G(S:K444R)

GISAID query: A22893G, T1459C, C22498T
GISAID query for S:A475V: A22893G, T1459C, C22498T, C22986T
No. of seqs: 3(China 1(Taiwan) Singapore 1 Netherlands 1)

First: EPI_ISL_19709625, Taiwan, 2025-2-3
Latest: EPI_ISL_19873775, Netherlands, 2025-4-28

usher

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@FedeGueli
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this was found first by @cvejris in #2199

@xz-keg xz-keg closed this as completed May 19, 2025
@FedeGueli FedeGueli changed the title NY.3+Orf1a:T4311I+S:K444R(3 seqs, 3 places, 2 with S:A475V) NY.3+Orf1a:T4311I+S:K444R(5 seqs, 5 places, 2 with S:A475V) May 20, 2025
@FedeGueli FedeGueli reopened this May 20, 2025
@FedeGueli
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Please keep it open i will close the multiple LP.8.1 issue soon

@FedeGueli
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now 5 Singapore, Netherlands

@xz-keg
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xz-keg commented May 20, 2025

+1 Canada +1 Spain on S:A475V branch

@xz-keg xz-keg changed the title NY.3+Orf1a:T4311I+S:K444R(5 seqs, 5 places, 2 with S:A475V) NY.3+Orf1a:T4311I+S:K444R(5 seqs, 5 places, 4 with S:A475V) May 20, 2025
@Sinickle
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2 more with S:A475V in Denmark. So for the ones with S:A475V, its first 8 days by submission date has had 6 sequences and 5 countries, 3 continents.

@xz-keg xz-keg changed the title NY.3+Orf1a:T4311I+S:K444R(5 seqs, 5 places, 4 with S:A475V) NY.3+Orf1a:T4311I+S:K444R(7 seqs, 6 places, 6 with S:A475V) May 23, 2025
@FedeGueli
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2 more with S:A475V in Denmark. So for the ones with S:A475V, its first 8 days by submission date has had 6 sequences and 5 countries, 3 continents.

Thanks for highlighting this!

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