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XFJ + S:V1264L ( 15 France-4 regions, California) 40% prevalence in Rhone (Fr) in May with a branch with S:I19V (5 France - 3 regions, California) #2604

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FedeGueli opened this issue May 14, 2025 · 3 comments
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XFJ + S:V1264L ( 15 France-4 regions, California) 40% prevalence in Rhone (Fr) in May with a branch with S:I19V (5 France - 3 regions, California) #2604

FedeGueli opened this issue May 14, 2025 · 3 comments
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Rapid review needed S:1264 XFJ

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@FedeGueli
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FedeGueli commented May 14, 2025 •
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XFJ got v1264L via G25352T spotted by @Walde1nsamkeit here
Edited : it seems that there is a fast grwoing S:I19V branch added it to the proposal on May 21

XFJ >> S:V1264L (G25352T)
Query: G25352T,T20799C,G27414A
Samples: 15
First collected on 2025-04-07
Places: France ( 4 Regions), California
Query for S:I19V: 21617G,C4893T,T20799C,T3565C
Samples: 5 France (3 Regions), California

Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_3e8b74_443940.json?label=id:node_7163179
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@FedeGueli
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sorry @Walde1nsamkeit i searched for your comment in this repo just after the proposal i recalled it was in the other repo. credits added.

@Walde1nsamkeit
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12 now

@xz-keg xz-keg changed the title XFJ + S:V1264L ( 5 France-3 regions) XFJ + S:V1264L ( 12 France-3 regions) May 18, 2025
@FedeGueli FedeGueli changed the title XFJ + S:V1264L ( 12 France-3 regions) XFJ + S:V1264L ( 12 France-3 regions) 20% prevalence in Rhone (Fr) May 18, 2025
@FedeGueli
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12 now

20% recently in Rhone, likely more than that then

@xz-keg xz-keg changed the title XFJ + S:V1264L ( 12 France-3 regions) 20% prevalence in Rhone (Fr) XFJ + S:V1264L ( 13 France-4 regions) 20% prevalence in Rhone (Fr) May 20, 2025
@FedeGueli FedeGueli changed the title XFJ + S:V1264L ( 13 France-4 regions) 20% prevalence in Rhone (Fr) XFJ + S:V1264L ( 15 France-4 regions) 40% prevalence in Rhone (Fr) in May May 20, 2025
@FedeGueli FedeGueli changed the title XFJ + S:V1264L ( 15 France-4 regions) 40% prevalence in Rhone (Fr) in May XFJ + S:V1264L ( 15 France-4 regions) 40% prevalence in Rhone (Fr) in May with a branch with S:I19V (5 France - 3 regions, California) May 21, 2025
@FedeGueli FedeGueli changed the title XFJ + S:V1264L ( 15 France-4 regions) 40% prevalence in Rhone (Fr) in May with a branch with S:I19V (5 France - 3 regions, California) XFJ + S:V1264L ( 15 France-4 regions, California) 40% prevalence in Rhone (Fr) in May with a branch with S:I19V (5 France - 3 regions, California) May 21, 2025
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