Manage TinyTeX installation with Quarto (#814)

* Manage TinyTeX installation with Quarto

Add CLI options to `install_quarto.sh` to install, update, add to path, or uninstall TinyTeX

Add an option to use Workbench's preinstalled Quarto for TinyTeX management

* Add TinyTeX test to Goss

Fix usage error

* Auto-detect Workbench installed Quarto and use if present

* Update product/base/scripts/ubuntu/install_quarto.sh

Co-authored-by: Benjamin R. J. Schwedler <[email protected]>

* Move Quarto and TinyTeX install to after workbench install in WGCW

---------

Co-authored-by: Benjamin R. J. Schwedler <[email protected]>

Author: ianpittwood

connect/Dockerfile.ubuntu2204

@@ -12,7 +12,7 @@ ARG QUARTO_VERSION=1.4.557
 ARG SCRIPTS_DIR=/opt/positscripts
 
 ### Install Quarto ###
-RUN QUARTO_VERSION=${QUARTO_VERSION} ${SCRIPTS_DIR}/install_quarto.sh \
+RUN QUARTO_VERSION=${QUARTO_VERSION} ${SCRIPTS_DIR}/install_quarto.sh --install-tinytex --add-path-tinytex \
     && ln -s /opt/quarto/${QUARTO_VERSION}/bin/quarto /usr/local/bin/quarto
 
 SHELL [ "/bin/bash", "-o", "pipefail", "-c"]

connect/test/goss.yaml

@@ -114,3 +114,10 @@ command:
   "/usr/local/bin/quarto check --quiet":
     title: quarto_check
     exit-status: 0
+
+# Ensure TinyTeX is installed
+  "quarto list tools":
+    title: quarto_tinytex_installed
+    exit-status: 0
+    stderr:
+      - "/tinytex\\s+Up to date\\s+v\\d{4}\\.\\d{2}\\.\\d{2}\\s+v\\d{4}\\.\\d{2}\\.\\d{2}/"

product/base/Dockerfile.ubuntu2204

@@ -30,14 +30,6 @@ RUN gpg --batch --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys 595E85A6B1
     && chmod +x /tini \
     && ln -s /tini /usr/local/bin/tini
 
-### Install TinyTeX ###
-SHELL ["/bin/bash", "-o", "pipefail", "-c"]
-RUN curl -sL "https://yihui.org/tinytex/install-bin-unix.sh" | sh \
-    && /root/.TinyTeX/bin/*/tlmgr path remove \
-    && mv /root/.TinyTeX/ /opt/TinyTeX \
-    && /opt/TinyTeX/bin/*/tlmgr option sys_bin /usr/local/bin \
-    && /opt/TinyTeX/bin/*/tlmgr path add
-
 ### Install R versions ###
 RUN R_VERSION=${R_VERSION} ${SCRIPTS_DIR}/install_r.sh \
     && R_VERSION=${R_VERSION_ALT} ${SCRIPTS_DIR}/install_r.sh \

product/base/scripts/ubuntu/install_quarto.sh

@@ -16,18 +16,34 @@ usage() {
     echo "  QUARTO_VERSION=1.3.340 $0"
     echo ""
     echo "Options:"
-    echo "  -d, --debug         Enable debug output"
-    echo "  -h, --help          Print usage and exit"
-    echo "      --prefix        Install Quarto to a custom prefix"
-    echo "                      Each version of Quarto will have its own subdirectory"
-    echo "                      Default: /opt/quarto"
+    echo "  -d, --debug                   Enable debug output"
+    echo "  -h, --help                    Print usage and exit"
+    echo "      --prefix                  Install Quarto to a custom prefix"
+    echo "                                Each version of Quarto will have its own subdirectory"
+    echo "                                Default: /opt/quarto"
+    echo "      --install-tinytex         Install TinyTeX using Quarto"
+    echo "      --add-path-tinytex        Add TinyTeX to PATH using Quarto"
+    echo "      --update-tinytex          Update TinyTeX using Quarto"
+    echo "      --uninstall-tinytex       Uninstall TinyTeX from Quarto"
 }
 
 
 # Set defaults
 PREFIX="/opt/quarto"
+QUARTO_PATH="${PREFIX}/${QUARTO_VERSION}/bin/quarto"
+ADD_PATH_TINYTEX=0
+INSTALL_TINYTEX=0
+UPDATE_TINYTEX=0
+UNINSTALL_TINYTEX=0
+IS_WORKBENCH_INSTALLATION=0
 
-OPTIONS=$(getopt -o hdr: --long help,debug,prefix: -- "$@")
+# Set Quarto Path to the bundled version in Workbench if it exists
+if [ -f "/lib/rstudio-server/bin/quarto/bin/quarto" ]; then
+    QUARTO_PATH="/lib/rstudio-server/bin/quarto/bin/quarto"
+    IS_WORKBENCH_INSTALLATION=1
+fi
+
+OPTIONS=$(getopt -o hd --long help,debug,prefix:,install-tinytex,add-path-tinytex,update-tinytex,uninstall-tinytex -- "$@")
 # shellcheck disable=SC2181
 if [[ $? -ne 0 ]]; then
     exit 1;
@@ -49,21 +65,37 @@ while true; do
             PREFIX="$2"
             shift 2
             ;;
+        --install-tinytex)
+            INSTALL_TINYTEX=1
+            shift
+            ;;
+        --add-path-tinytex)
+            ADD_PATH_TINYTEX=1
+            shift
+            ;;
+        --update-tinytex)
+            UPDATE_TINYTEX=1
+            shift
+            ;;
+        --uninstall-tinytex)
+            UNINSTALL_TINYTEX=1
+            shift
+            ;;
         --) shift;
             break
             ;;
     esac
 done
 
-if [ -z "$QUARTO_VERSION" ]; then
+if [ -z "$QUARTO_VERSION" ] && [[ "$IS_WORKBENCH_INSTALLATION" -eq 0 ]]; then
     usage
     exit 1
 fi
 
 install_quarto() {
     # Check if Quarto is already installed
     # shellcheck disable=SC2086
-    if ${PREFIX}/${QUARTO_VERSION}/bin/quarto --version | grep -qE "^${QUARTO_VERSION}" ; then
+    if $QUARTO_PATH --version | grep -qE "^${QUARTO_VERSION}" ; then
         echo "$d Quarto $QUARTO_VERSION is already installed in $PREFIX/$QUARTO_VERSION $d"
         return
     fi
@@ -72,4 +104,33 @@ install_quarto() {
     wget -q -O - "https://github.com/quarto-dev/quarto-cli/releases/download/v${QUARTO_VERSION}/quarto-${QUARTO_VERSION}-linux-amd64.tar.gz" | tar xzf - -C "/opt/quarto/${QUARTO_VERSION}" --strip-components=1
 }
 
-install_quarto
+update_tinytex() {
+    $QUARTO_PATH update tinytex --no-prompt
+}
+
+uninstall_tinytex() {
+    $QUARTO_PATH uninstall tinytex --no-prompt
+}
+
+install_tinytex() {
+    uninstall_tinytex
+    if [[ "$ADD_PATH_TINYTEX" -eq 1 ]]; then
+        $QUARTO_PATH install tinytex --update-path --no-prompt
+    else
+        $QUARTO_PATH install tinytex --no-prompt
+    fi
+}
+
+if [[ "$IS_WORKBENCH_INSTALLATION" -eq 0 ]]; then
+    # Skip installation if Quarto is bundled with Workbench
+    install_quarto
+fi
+if [[ "$INSTALL_TINYTEX" -eq 1 ]]; then
+    install_tinytex
+fi
+if [[ "$UPDATE_TINYTEX" -eq 1 ]]; then
+    update_tinytex
+fi
+if [[ "$UNINSTALL_TINYTEX" -eq 1 ]]; then
+    uninstall_tinytex
+fi

r-session-complete/Dockerfile.ubuntu2204

@@ -40,6 +40,9 @@ RUN apt-get update \
 ### Install Quarto to PATH ###
 RUN ln -s /lib/rstudio-server/bin/quarto/bin/quarto /usr/local/bin/quarto
 
+### Install TinyTeX using Quarto ###
+RUN $SCRIPTS_DIR/install_quarto.sh --install-tinytex --add-path-tinytex
+
 COPY maybe_install_vs_code.sh /tmp/maybe_install_vs_code.sh
 RUN /tmp/maybe_install_vs_code.sh \
     && rm /tmp/maybe_install_vs_code.sh

r-session-complete/test/goss.yaml

@@ -60,3 +60,10 @@ command:
   "/usr/local/bin/quarto check --quiet":
     title: quarto_check
     exit-status: 0
+
+# Ensure TinyTeX is installed
+  "quarto list tools":
+    title: quarto_tinytex_installed
+    exit-status: 0
+    stderr:
+      - "/tinytex\\s+Up to date\\s+v\\d{4}\\.\\d{2}\\.\\d{2}\\s+v\\d{4}\\.\\d{2}\\.\\d{2}/"

workbench-for-google-cloud-workstations/Dockerfile.ubuntu2204

@@ -69,9 +69,6 @@ ENV LANG en_US.UTF-8
 ENV LANGUAGE en_US:en
 ENV LC_ALL en_US.UTF-8
 
-### Install Quarto to PATH ###
-RUN ln -s /lib/rstudio-server/bin/quarto/bin/quarto /usr/local/bin/quarto
-
 ### Install Pro Drivers ###
 RUN ${SCRIPTS_DIR}/apt.sh --update upgrade \
     && ${SCRIPTS_DIR}/apt.sh install unixodbc unixodbc-dev \
@@ -99,6 +96,12 @@ RUN curl -o rstudio-workbench.deb "${RSW_DOWNLOAD_URL}/${RSW_NAME}-${RSW_VERSION
     && rm -rf /var/lib/apt/lists/* \
     && rm -rf /var/lib/rstudio-server/r-versions
 
+### Install Quarto to PATH ###
+RUN ln -s /lib/rstudio-server/bin/quarto/bin/quarto /usr/local/bin/quarto
+
+### Install TinyTeX using Quarto ###
+RUN $SCRIPTS_DIR/install_quarto.sh --install-tinytex --add-path-tinytex
+
 # Workaround to ensure no pre-generated certificates are included in image distributions.
 # This happens in the step immediately following Workbench installation in case the certificates are generated.
 RUN rm -f /etc/rstudio/launcher.pem /etc/rstudio/launcher.pub

workbench-for-google-cloud-workstations/test/goss.yaml

@@ -233,3 +233,10 @@ command:
   "/usr/local/bin/quarto check --quiet":
     title: quarto_check
     exit-status: 0
+
+# Ensure TinyTeX is installed
+  "quarto list tools":
+    title: quarto_tinytex_installed
+    exit-status: 0
+    stderr:
+      - "/tinytex\\s+Up to date\\s+v\\d{4}\\.\\d{2}\\.\\d{2}\\s+v\\d{4}\\.\\d{2}\\.\\d{2}/"

workbench-for-microsoft-azure-ml/Dockerfile.ubuntu2204

@@ -68,6 +68,9 @@ RUN rm -f /etc/rstudio/launcher.pem /etc/rstudio/launcher.pub
 ### Install Quarto to PATH ###
 RUN ln -s /lib/rstudio-server/bin/quarto/bin/quarto /usr/local/bin/quarto
 
+### Install TinyTeX using Quarto ###
+RUN $SCRIPTS_DIR/install_quarto.sh --install-tinytex --add-path-tinytex
+
 COPY --chmod=0755 license-manager-shim /opt/rstudio-license/license-manager
 COPY --chmod=0775 startup.sh /usr/local/bin/startup.sh
 COPY startup/* /startup/base/

workbench-for-microsoft-azure-ml/test/goss.yaml

@@ -151,3 +151,10 @@ command:
   "/usr/local/bin/quarto check --quiet":
     title: quarto_check
     exit-status: 0
+
+# Ensure TinyTeX is installed
+  "quarto list tools":
+    title: quarto_tinytex_installed
+    exit-status: 0
+    stderr:
+      - "/tinytex\\s+Up to date\\s+v\\d{4}\\.\\d{2}\\.\\d{2}\\s+v\\d{4}\\.\\d{2}\\.\\d{2}/"

workbench/Dockerfile.ubuntu2204

@@ -70,6 +70,9 @@ RUN rm -f /etc/rstudio/launcher.pem /etc/rstudio/launcher.pub
 ### Install Quarto to PATH ###
 RUN ln -s /lib/rstudio-server/bin/quarto/bin/quarto /usr/local/bin/quarto
 
+### Install TinyTeX using Quarto ###
+RUN $SCRIPTS_DIR/install_quarto.sh --install-tinytex --add-path-tinytex
+
 COPY maybe_install_vs_code.sh /tmp/maybe_install_vs_code.sh
 RUN /tmp/maybe_install_vs_code.sh \
     && rm /tmp/maybe_install_vs_code.sh

workbench/test/goss.yaml

@@ -148,3 +148,10 @@ command:
   "/usr/local/bin/quarto check --quiet":
     title: quarto_check
     exit-status: 0
+
+# Ensure TinyTeX is installed
+  "quarto list tools":
+    title: quarto_tinytex_installed
+    exit-status: 0
+    stderr:
+      - "/tinytex\\s+Up to date\\s+v\\d{4}\\.\\d{2}\\.\\d{2}\\s+v\\d{4}\\.\\d{2}\\.\\d{2}/"