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support #402 
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‎DESCRIPTION

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Package: geoflow
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Version: 0.9999.20241210
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Date: 2024-12-10
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Version: 0.9999.20241231
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Date: 2024-12-31
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Title: Orchestrate Geospatial (Meta)Data Management Workflows and Manage FAIR Services
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Description: An engine to facilitate the orchestration and execution of metadata-driven data management workflows, in compliance with FAIR
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(Findable, Accessible, Interoperable and Reusable) data management principles. By means of a pivot metadata model, relying on the DublinCore standard (<https://dublincore.org/>),

‎R/geoflow_action.R

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‎inst/actions/atom4R_dataverse_deposit_record.yml

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id: atom4R-dataverse-deposit-record
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fun: atom4R_dataverse_deposit_record.R
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funders:
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- name: Réseau Zone Ateliers
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url: https://www.za-inee.org/
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authors:
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- name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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orphaned: true
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types:
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- Data upload
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- Data publication
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- Metadata publication
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- DOI management
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def: Deposits/Publish data and/or metetadata on a Dataverse using the Sword API
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target: job
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target_dir: dataverse
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pid_generator: dataverse
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pid_types:
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doi: DOI_for_version
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generic_uploader: true
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packages:
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- atom4R
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available_options:
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depositWithFiles:
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def: Indicates if the action is uploading files
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class: logical
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default: false
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publish:
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def: Indicates if the action should publish the deposit. Requires 'depositWithFiles' set to TRUE
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class: logical
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default: false
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deleteOldFiles:
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def: Indicates if the action should delete old files prior upload new files
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class: logical
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default: true
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update_metadata:
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def: For an existing deposit, indicates if metadata elements should be updated
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class: logical
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default: true
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update_files:
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def: For an existing deposit, indicates if files should be updated
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class: logical
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default: true

‎inst/actions/d4storagehub4R_upload_data.yml

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id: d4storagehub4R-upload-data
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fun: d4storagehub4R_upload_data.R
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funders: []
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authors:
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- name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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name: Emmanuel Blondel
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email: [email protected]
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types:
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- Data upload
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def: Upload data/metadata to a D4Science Workspace
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target: NA
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target_dir: NA
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generic_uploader: true
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packages:
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- d4storagehub4R
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available_options:
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depositWithFiles:
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def: Indicates if the action is uploading files
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class: logical
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default: false
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otherUploadFolders:
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def: List of Folders (other than 'data' and 'metadata') to upload and which may contain files which should enrich others actions
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class: character
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choices: []
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add_choices: true
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multiple: true
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default: NULL

‎inst/actions/dataone_upload_datapackage.yml

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id: dataone-upload-datapackage
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fun: dataone_upload_datapackage.R
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funders:
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- name: Réseau Zone Ateliers
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url: https://www.za-inee.org/
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authors:
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- name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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orphaned: true
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types:
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- Data upload
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- Data publication
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- Metadata publication
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- DOI management
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def: Uploads a data package to a DataOne metacat node
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target: job
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target_dir: dataone
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pid_generator: dataone
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pid_types:
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packageId: PackageId
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packages:
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- mime
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- datapack
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- dataone
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available_options: []

‎inst/actions/eml_create_eml.yml

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id: eml-create-eml
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fun: eml_create_eml.R
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funders:
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- name: Réseau Zone Ateliers
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url: https://www.za-inee.org/
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authors:
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- name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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orphaned: true
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types:
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- Metadata production
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def: Produce an EML metadata object
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target: entity
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target_dir: metadata
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packages:
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- EML
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- emld
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available_options:
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subject_taxonomy:
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def: Identifier of the subject handling the Taxonomic coverage
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class: character
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default: taxonomy

‎inst/actions/geometa_create_iso_19110.yml

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id: geometa-create-iso-19110
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fun: geometa_create_iso_19110.R
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funders:
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- name: R Consortium
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url: https://r-consortium.org/
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- name: UN-FAO
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url: https://www.fao.org
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- name: IRD
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url: https:/www.ird.fr
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- name: INRAE
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url: https://www.inrae.fr
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authors:
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-
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name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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name: Emmanuel Blondel
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email: [email protected]
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types:
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- Metadata production
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def: Produce an ISO 19110 metadata object and export it to XML
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target: entity
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target_dir: metadata
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packages:
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- geometa
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available_options:
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doi:
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def: Add entity DOI - if defined - as metadata identifier and online resource
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class: logical
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default: false
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exclude_attributes:
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def: Attributes that should be excluded from the ISO 19110 production
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class: character
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choices: []
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add_choices: true
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multiple: true
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default: NULL
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exclude_attributes_not_in_dictionary:
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def: Enable to exclude all attributes/variables not referenced as dictionary/featuretype
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class: logical
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default: false
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exclude_values_for_attributes:
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def: Attribute names for which listed values should not be produced
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class: character
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choices: []
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add_choices: true
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multiple: true
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default: NULL
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extra_attributes:
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def: Extra attributes to add as feature catalog attributes although not in data
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class: character
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choices: []
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add_choices: true
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multiple: true
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default: NULL
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default_min_occurs:
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def: The default min occurs value for feature attributes cardinality
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class: integer
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default: 0
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default_max_occurs:
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def: The default max occurs value for feature attribute cardinality
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class: numeric
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default: Inf

‎inst/actions/geometa_create_iso_19115.yml

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id: geometa-create-iso-19115
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fun: geometa_create_iso_19115.R
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funders:
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- name: R Consortium
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url: https://r-consortium.org/
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- name: UN-FAO
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url: https://www.fao.org
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- name: IRD
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url: https:/www.ird.fr
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- name: INRAE
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url: https://www.inrae.fr
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authors:
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-
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name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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name: Emmanuel Blondel
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email: [email protected]
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types:
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- Metadata production
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def: Produce an ISO/OGC 19115 metadata object and export it to XML
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target: entity
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target_dir: metadata
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packages:
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- geometa
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- ows4R
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available_options:
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use_uuid:
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def: Use UUID as metadata identifier, if not defined the UUID is pre-generated
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class: logical
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default: false
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doi:
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def: Add entity DOI - if defined - as metadata identifier and online resource
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class: logical
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default: false
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doi_thumbnail:
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def: if option 'doi' is true and this option enabled, a DOI thumbnail will be added
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class: logical
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default: false
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inspire:
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def: Validates ISO 19139 metadata with INSPIRE reference validator
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class: logical
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default: false
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logo:
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def: Add configure profile logo(s) - if defined - as metadata thumbnail(s)
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class: logical
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default: false
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addfeatures:
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def: Add entity data features - if defined - as metadata bounding polygon(s)
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class: logical
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default: false
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featureid:
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def: ID of entity data features used to identify bounding polygon(s) with option 'addfeatures'
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class: character
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default: NA
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subject_geography:
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def: Identifier of the subject handling a Geographic coverage.
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class: character
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default: geography
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include_service_identification:
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def: Include service identification info metadata block
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class: logical
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default: false
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include_coverage_data_dimension_values:
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def: Include data dimensions's range values to coverage description
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class: logical
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default: false
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include_coverage_service_dimension_values:
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def: Include ogc dimensions's range values to coverage description
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class: logical
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default: false

‎inst/actions/geonapi_publish_iso_19139.yml

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id: geonapi-publish-iso-19139
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fun: geonapi_publish_iso_19139.R
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funders:
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- name: UN-FAO
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url: https://www.fao.org
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- name: IRD
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url: https:/www.ird.fr
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- name: INRAE
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url: https://www.inrae.fr
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authors:
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- name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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name: Emmanuel Blondel
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email: [email protected]
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types:
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- Metadata publication
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def: Publish/Update an ISO/OGC 19139 metadata object with GeoNetwork API
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target: entity
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target_dir: metadata
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packages:
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- geometa
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- geonapi
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available_options:
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geometa_inspire:
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def: Validates ISO 19139 metadata with INSPIRE reference validator before publication
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class: logical
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default: false
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privileges:
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def: Geonetwork privileges to set for the metadata to be published
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class: character
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choices:
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- view
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- dynamic
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- download
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- editing
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- notify
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- featured
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default:
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- view
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- dynamic
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- download
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- featured
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multiple: true
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group:
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def: Geonetwork user group to which the metadata should be associated
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class: character
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default: 2
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category:
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def: Category of metadata resources to which the metadata record should be associated
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class: character
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default: datasets
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add_metadata_link:
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def: Adds a link (as online resource) that points to the published metadata (as OGC CSW GetRecordById URL)
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class: logical
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default: true
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publish_thumbnails:
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def: Uploads local thumbnails as attachments and publish them as thumbnails / graphic overviews
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class: logical
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default: false
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create_doi_on_datacite:
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def: Creates DOIs on DataCite. Requires a DataCite account to be registered in the GeoNetwork administration panel.
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class: logical
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default: false

‎inst/actions/geonode4R_publish_ogc_services.yml

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id: geonode4R-publish-ogc-services
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fun: geonode4R_publish_ogc_services.R
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funders:
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- name: IRD
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url: https:/www.ird.fr
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authors:
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- name: Emmanuel Blondel
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email: [email protected]
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maintainer:
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name: Emmanuel Blondel
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email: [email protected]
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types:
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- Data upload
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- Data publication
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- Metadata publication
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def: Publish data to GeoNode OGC web-services (WMS/WFS/WCS)
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target: NA
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target_dir: NA
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packages:
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- geonode4R
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available_options: []

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