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src/strpkg/collect.nim

+1-1
Original file line numberDiff line numberDiff line change
@@ -34,7 +34,7 @@ proc tostring*(s:Support, b:Bounds, chrom:string): string =
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result = &"{chrom}\t{b.left}\t{b.right}\t{s.Type}\t{s.SpanningFragmentLength}\t{s.SpanningFragmentPercentile}\t{s.SpanningReadRepeatCount}\t{s.SpanningReadCigarInsertionLen}\t{s.SpanningReadCigarDeletionLen}\t{s.repeat}\t{s.qname}"
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proc spanning_fragment*(L:Record, R:Record, bounds:Bounds, support:var Support, frag_sizes: array[4096, uint32]): bool =
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doAssert L.start <= R.start
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doAssert L.start <= R.start, $(L, R, bounds)
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var bound_width = bounds.right.int - bounds.left.int
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var slop = bounds.repeat.len - 1
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if bound_width < 5: # Add extra slop for very small bounds

src/strpkg/version.nim

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@@ -1,4 +1,4 @@
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const strlingVersion* = "0.5.1"
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const strlingVersion* = "0.5.2"
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# bin file format version
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const thisFmtVersion* = 0'i16

strling.nimble

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@@ -9,7 +9,7 @@ template thisModuleFile: string = instantiationInfo(fullPaths = true).filename
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# # When the package is installed, the ``src`` directory disappears.
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# import strpkg/version as _
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version = "0.5.1"
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version = "0.5.2"
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author = "Harriet and Brent"
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description = "Novel STR caller"
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license = "MIT"

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