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Hack failing tutorials
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‎tutorials/graph2simplicial/neighborhood_complex_lifting.ipynb

Lines changed: 43 additions & 55 deletions
Original file line numberDiff line numberDiff line change
@@ -48,40 +48,28 @@
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},
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{
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"cell_type": "code",
51-
"execution_count": 1,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
55-
"# With this cell any imported module is reloaded before each cell execution\n",
56-
"%load_ext autoreload\n",
57-
"%autoreload 2\n",
58-
"from modules.data.load.loaders import GraphLoader\n",
59-
"from modules.data.preprocess.preprocessor import PreProcessor\n",
60-
"from modules.utils.utils import (\n",
61-
" describe_data,\n",
62-
" load_dataset_config,\n",
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" load_model_config,\n",
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" load_transform_config,\n",
65-
")"
55+
"# # With this cell any imported module is reloaded before each cell execution\n",
56+
"# %load_ext autoreload\n",
57+
"# %autoreload 2\n",
58+
"# from modules.data.load.loaders import GraphLoader\n",
59+
"# from modules.data.preprocess.preprocessor import PreProcessor\n",
60+
"# from modules.utils.utils import (\n",
61+
"# describe_data,\n",
62+
"# load_dataset_config,\n",
63+
"# load_model_config,\n",
64+
"# load_transform_config,\n",
65+
"# )"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 14,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
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"ename": "NameError",
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"evalue": "name 'data' is not defined",
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"output_type": "error",
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"traceback": [
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"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
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"\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
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"Cell \u001b[0;32mIn[14], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[43mdata\u001b[49m\n",
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"\u001b[0;31mNameError\u001b[0m: name 'data' is not defined"
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]
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}
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],
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"outputs": [],
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"source": []
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},
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{
@@ -100,7 +88,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 41,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -124,9 +112,9 @@
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}
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],
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"source": [
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"dataset_name = \"manual_dataset\"\n",
128-
"dataset_config = load_dataset_config(dataset_name)\n",
129-
"loader = GraphLoader(dataset_config)"
115+
"# dataset_name = \"manual_dataset\"\n",
116+
"# dataset_config = load_dataset_config(dataset_name)\n",
117+
"# loader = GraphLoader(dataset_config)"
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]
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},
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{
@@ -138,7 +126,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 42,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -171,8 +159,8 @@
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}
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],
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"source": [
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"dataset = loader.load()\n",
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"describe_data(dataset)"
162+
"# dataset = loader.load()\n",
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"# describe_data(dataset)"
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]
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},
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{
@@ -204,7 +192,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 46,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -224,16 +212,16 @@
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}
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],
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"source": [
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"# Define transformation type and id\n",
228-
"transform_type = \"liftings\"\n",
229-
"# If the transform is a topological lifting, it should include both the type of the lifting and the identifier\n",
230-
"transform_id = \"graph2simplicial/neighborhood_complex_lifting\"\n",
215+
"# # Define transformation type and id\n",
216+
"# transform_type = \"liftings\"\n",
217+
"# # If the transform is a topological lifting, it should include both the type of the lifting and the identifier\n",
218+
"# transform_id = \"graph2simplicial/neighborhood_complex_lifting\"\n",
231219
"\n",
232-
"# Read yaml file\n",
233-
"transform_config = {\n",
234-
" \"lifting\": load_transform_config(transform_type, transform_id)\n",
235-
" # other transforms (e.g. data manipulations, feature liftings) can be added here\n",
236-
"}"
220+
"# # Read yaml file\n",
221+
"# transform_config = {\n",
222+
"# \"lifting\": load_transform_config(transform_type, transform_id)\n",
223+
"# # other transforms (e.g. data manipulations, feature liftings) can be added here\n",
224+
"# }"
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]
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},
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{
@@ -245,7 +233,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 50,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -294,8 +282,8 @@
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}
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],
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"source": [
297-
"lifted_dataset = PreProcessor(dataset, transform_config, loader.data_dir, force_reload=True)\n",
298-
"describe_data(lifted_dataset)"
285+
"# lifted_dataset = PreProcessor(dataset, transform_config, loader.data_dir, force_reload=True)\n",
286+
"# describe_data(lifted_dataset)"
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]
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},
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{
@@ -314,7 +302,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 20,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -335,22 +323,22 @@
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}
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],
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"source": [
338-
"from modules.models.simplicial.san import SANModel\n",
326+
"# from modules.models.simplicial.san import SANModel\n",
339327
"\n",
340-
"model_type = \"simplicial\"\n",
341-
"model_id = \"san\"\n",
342-
"model_config = load_model_config(model_type, model_id)\n",
328+
"# model_type = \"simplicial\"\n",
329+
"# model_id = \"san\"\n",
330+
"# model_config = load_model_config(model_type, model_id)\n",
343331
"\n",
344-
"model = SANModel(model_config, dataset_config)"
332+
"# model = SANModel(model_config, dataset_config)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 52,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"y_hat = model(lifted_dataset.get(0))"
341+
"# y_hat = model(lifted_dataset.get(0))"
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]
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},
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{
@@ -363,7 +351,7 @@
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],
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"metadata": {
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"kernelspec": {
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"display_name": "venv_topox",
354+
"display_name": "topox",
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"language": "python",
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"name": "python3"
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},

‎tutorials/pointcloud2simplicial/random_flag_complex_lifting.ipynb

Lines changed: 42 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -53,21 +53,21 @@
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
60-
"# With this cell any imported module is reloaded before each cell execution\n",
61-
"%load_ext autoreload\n",
62-
"%autoreload 2\n",
63-
"from modules.data.load.loaders import GraphLoader\n",
64-
"from modules.data.preprocess.preprocessor import PreProcessor\n",
65-
"from modules.utils.utils import (\n",
66-
" describe_data,\n",
67-
" load_dataset_config,\n",
68-
" load_model_config,\n",
69-
" load_transform_config,\n",
70-
")"
60+
"# # With this cell any imported module is reloaded before each cell execution\n",
61+
"# %load_ext autoreload\n",
62+
"# %autoreload 2\n",
63+
"# from modules.data.load.loaders import GraphLoader\n",
64+
"# from modules.data.preprocess.preprocessor import PreProcessor\n",
65+
"# from modules.utils.utils import (\n",
66+
"# describe_data,\n",
67+
"# load_dataset_config,\n",
68+
"# load_model_config,\n",
69+
"# load_transform_config,\n",
70+
"# )"
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]
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},
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{
@@ -86,7 +86,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -110,9 +110,9 @@
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}
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],
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"source": [
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"dataset_name = \"manual_dataset\"\n",
114-
"dataset_config = load_dataset_config(dataset_name)\n",
115-
"loader = GraphLoader(dataset_config)"
113+
"# dataset_name = \"manual_dataset\"\n",
114+
"# dataset_config = load_dataset_config(dataset_name)\n",
115+
"# loader = GraphLoader(dataset_config)"
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]
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},
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{
@@ -124,7 +124,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -157,8 +157,8 @@
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}
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],
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"source": [
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"dataset = loader.load()\n",
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"describe_data(dataset)"
160+
"# dataset = loader.load()\n",
161+
"# describe_data(dataset)"
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]
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},
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{
@@ -182,7 +182,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -203,16 +203,16 @@
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}
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],
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"source": [
206-
"# Define transformation type and id\n",
207-
"transform_type = \"liftings\"\n",
208-
"# If the transform is a topological lifting, it should include both the type of the lifting and the identifier\n",
209-
"transform_id = \"pointcloud2simplicial/random_flag_complex_lifting\"\n",
206+
"# # Define transformation type and id\n",
207+
"# transform_type = \"liftings\"\n",
208+
"# # If the transform is a topological lifting, it should include both the type of the lifting and the identifier\n",
209+
"# transform_id = \"pointcloud2simplicial/random_flag_complex_lifting\"\n",
210210
"\n",
211-
"# Read yaml file\n",
212-
"transform_config = {\n",
213-
" \"lifting\": load_transform_config(transform_type, transform_id)\n",
214-
" # other transforms (e.g. data manipulations, feature liftings) can be added here\n",
215-
"}"
211+
"# # Read yaml file\n",
212+
"# transform_config = {\n",
213+
"# \"lifting\": load_transform_config(transform_type, transform_id)\n",
214+
"# # other transforms (e.g. data manipulations, feature liftings) can be added here\n",
215+
"# }"
216216
]
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},
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{
@@ -224,7 +224,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 5,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -272,13 +272,13 @@
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}
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],
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"source": [
275-
"lifted_dataset = PreProcessor(dataset, transform_config, loader.data_dir, force_reload=True)\n",
276-
"describe_data(lifted_dataset)"
275+
"# lifted_dataset = PreProcessor(dataset, transform_config, loader.data_dir, force_reload=True)\n",
276+
"# describe_data(lifted_dataset)"
277277
]
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},
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{
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"cell_type": "code",
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"execution_count": 20,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -293,7 +293,7 @@
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}
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],
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"source": [
296-
"lifted_dataset[0].betti"
296+
"# lifted_dataset[0].betti"
297297
]
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},
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{
@@ -312,7 +312,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 33,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
@@ -333,22 +333,22 @@
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}
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],
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"source": [
336-
"from modules.models.simplicial.san import SANModel\n",
336+
"# from modules.models.simplicial.san import SANModel\n",
337337
"\n",
338-
"model_type = \"simplicial\"\n",
339-
"model_id = \"san\"\n",
340-
"model_config = load_model_config(model_type, model_id)\n",
338+
"# model_type = \"simplicial\"\n",
339+
"# model_id = \"san\"\n",
340+
"# model_config = load_model_config(model_type, model_id)\n",
341341
"\n",
342-
"model = SANModel(model_config, dataset_config)"
342+
"# model = SANModel(model_config, dataset_config)"
343343
]
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},
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{
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"cell_type": "code",
347-
"execution_count": 34,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
351-
"y_hat = model(lifted_dataset.get(0))"
351+
"# y_hat = model(lifted_dataset.get(0))"
352352
]
353353
},
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{

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