Open Problems in Single-Cell Analysis

Type: All

Visibility: All

Sort by: Most downloads

30 packages

metrics/ks_statistic_spatial
Published Aug 6, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

735
metrics/density_preservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

723
metrics/clustering_performance
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

611
common/extract_metadata
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

592
metrics/poisson
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

528
metrics/mse
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

499
metrics/r2
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

427
robustness_analysis/noise_grn
Published Aug 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

400
metrics/trustworthiness
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

360
metrics/correlation
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

314
data_processors/process_dataset
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

307
methods/mnnpy
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

306
metrics/mse
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

296
metrics/downstream
Published Aug 16, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

294
methods/batchelor_mnn_correct
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

285
methods/scanorama
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

250
methods/pyliger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

244
methods/xgboost
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

241
methods/simlr
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

235
stability_analysis/permute_grn
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

234
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

226
control_methods/shuffle_integration_by_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

221
control_methods/shuffle_integration_by_cell_type
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

220
methods/liger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

217
control_methods/shuffle_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

216
methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

211
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

209
methods/scprint
Published Jan 6, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

206
control_methods/embed_cell_types_jittered
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

205
control_methods/no_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

204