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    17 repositories

    • nf-munge-sumstats

      Public
      Nextflow pipeline to download and format (i.e. munge) GWAS summary statistics
      Nextflow
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • nf-download-sumstats

      Public
      Nextflow pipeline for downloading raw GWAS summary statistics to be then processed using `nf-munge-sumstats`
      Nextflow
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • gwascatftp

      Public
      R package to access GWAS Catalog FTP data
      R
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Jan 28, 2025Jan 28, 2025

    • ukb-mgwas

      Public
      Analysis code used for metabolome-wide genome-wide association studies in the UKB
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • project-template

      Public template
      A suggested directory and file structure for analysis projects in the computational medicine group
      Shell
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • r-prodente

      Public
      Companion R package for a publication to run enrichment analysis across protein determining factors
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • nf-nmr-coloc

      Public
      Nextflow pipeline to run metabolome-wide colocalization analysis based on the `nf-scallop-coloc` pipeline.
      R
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nf-template

      Public template
      Template directory for Nextflow pipelines providing basic files and directories when setting up a new workflow
      Nextflow
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • proteome-determinants-somalogic

      Public
      R
      •0•1•0•0•Updated Jul 11, 2024Jul 11, 2024

    • sparse-proteomic-prediction-of-common-and-rare-diseases

      Public
      This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided scripts are not designed to work out of the box, but rather illustrate the main steps done for each of the analysis performed.
      R
      •5•16•1•0•Updated Jul 3, 2024Jul 3, 2024

    • script-backup-utility

      Public
      Bash scripts to search and backup all files in specific directories with a specific extension.
      Shell
      •0•0•0•0•Updated May 10, 2024May 10, 2024

    • phecode-covid19-ukb

      Public
      R
      •0•2•0•0•Updated Apr 17, 2024Apr 17, 2024

    • phecode-gwas-ukb

      Public
      R
      •0•1•0•0•Updated Mar 19, 2024Mar 19, 2024

    • all-inclusive-r-apptainer

      Public
      Definition files for building an R container using radian and including various additional libraries for installing R packages.
      Shell
      •0•0•0•0•Updated Feb 12, 2024Feb 12, 2024

    • olink-fasting-study

      Public
      R
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jan 10, 2024Jan 10, 2024

    • missingpy

      Public
      Missing Data Imputation for Python (2023 update)
      Python
      •
      GNU General Public License v3.0
      •64•0•0•0•Updated Oct 24, 2023Oct 24, 2023

    • .github

      Public
      Public organization README repository.
      0•0•0•0•Updated Oct 18, 2023Oct 18, 2023