Repositories list

• microns-funconn-2025

  Public
  Jupyter Notebook

  •

  MIT License

  •2•1•1•0•Updated Jul 17, 2025Jul 17, 2025

• foundation

  Public
  Neuronal recordings and Foundation models

  Python

  •

  GNU Lesser General Public License v2.1

  •5•9•0•1•Updated Jul 16, 2025Jul 16, 2025

• microns-base

  Public
  base environment for MICrONS repositories

  Dockerfile

  •2•0•0•0•Updated Apr 29, 2025Apr 29, 2025

• fnn

  Public
  Foundation neural network

  Python

  •

  MIT License

  •7•18•1•0•Updated Apr 17, 2025Apr 17, 2025

• datascience-notebook

  Public
  custom built environment for data analysis

  Dockerfile

  •2•0•0•0•Updated Apr 15, 2025Apr 15, 2025

• bipartite-invariance-2025

  Public
  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• MICrONS-to-nwb

  Public
  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• microns-coregistration

  Public
  microns functional / EM data coregistration

  Python

  •3•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• microns-materialization

  Public
  EM data materialization from Princeton & AIBS

  Python

  •3•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• microns-manual-proofreading

  Public
  microns manual proofreading

  Python

  •1•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• microns-proximities

  Public
  Repo for computing axonal-dendritic proximities in the MICrONS dataset

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• microns-morphology

  Public
  modules and schemas for morphological processing of EM datasets

  Python

  •3•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• pipeline

  Public
  Schemata and libraries for neuroscientific data

  Python

  •

  GNU Lesser General Public License v3.0

  •46•27•9•7•Updated Oct 21, 2024Oct 21, 2024

• trippy-monet

  Public
  The public repository describing the monet and trippy stimuli

  MIT License

  •3•1•0•1•Updated Jul 30, 2024Jul 30, 2024

• at-image

  Public
  image processing utilties

  Python

  •1•0•0•0•Updated Jan 28, 2024Jan 28, 2024

• datajoint-plus

  Public
  A DataJoint extension that integrates hashes and other features.

  Python

  •

  GNU Lesser General Public License v2.1

  •4•3•1•0•Updated Jan 9, 2024Jan 9, 2024

• microns-utils

  Public
  utils for MICrONS

  Python

  •

  GNU Lesser General Public License v2.1

  •2•0•0•0•Updated Jan 9, 2024Jan 9, 2024

• neuro_data

  Public
  Neuro Datasets for System Identification

  Python

  •19•2•1•3•Updated Jan 2, 2024Jan 2, 2024

• djutils

  Public
  Datajoint Utilities

  Jupyter Notebook

  •

  GNU Lesser General Public License v2.1

  •2•1•1•0•Updated Sep 21, 2023Sep 21, 2023

• dandi_microns_phase3_nda

  Public
  tutorials for downloading and operating on dandiset for microns minnie volume functional data

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 23, 2023Aug 23, 2023

• AvaTr

  Public
  Official implementation of the paper "AvaTr: One-Shot Speaker Extraction with Transformers"

  Python

  •1•3•0•0•Updated Jul 19, 2023Jul 19, 2023

• microns_phase3_nda

  Public
  nda schema for MICrONS phase3

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •49•8•3•0•Updated Jul 10, 2023Jul 10, 2023

• pipecontrol

  Public
  Website for interactions with pipeline.

  Python

  •

  MIT License

  •7•1•1•0•Updated Jul 7, 2023Jul 7, 2023

• microns-nda-access

  Public
  Provides instructions and Docker configurations for accessing the microns_phase3_nda schema and/or an isolated database container.

  Dockerfile

  •

  GNU General Public License v3.0

  •9•8•4•1•Updated Jun 29, 2023Jun 29, 2023

• databridge

  Public
  Data Bridge

  Python

  •0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

• microns-nda

  Public
  microns neural data access

  Python

  •3•1•0•1•Updated Jan 2, 2023Jan 2, 2023

• microns-dashboard

  Public
  Schemas and notebooks for the MICrONS Jupyterhub Dashboard

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 13, 2022Oct 13, 2022

• 21617_data_release

  Public
  functional data release for animal 21617

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 11, 2022Aug 11, 2022

• featurevis

  Public
  Visualize features cells are responsive to via gradient ascent.

  Jupyter Notebook

  •

  MIT License

  •2•1•0•1•Updated May 3, 2022May 3, 2022

• static_v1_data_release

  Public
  V1 imaging ROI, static natural image stimulus

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022