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@NorwegianVeterinaryInstitute Norwegian Veterinary Institute

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    86 repositories

    • listeriacalculator

      Public
      Listeria Calculator for raw fish
      R
      •
      Apache License 2.0
      •0•0•4•0•Updated Apr 24, 2025Apr 24, 2025

    • irida-plugin-nvi-MLST

      Public
      Java
      •0•0•7•0•Updated Apr 23, 2025Apr 23, 2025

    • purchase-assistant

      Public
      Used for the Purchase Assistant in Norway. Part of the DECIDE project
      R
      •0•0•1•0•Updated Apr 22, 2025Apr 22, 2025

    • nvi-tutorials

      Public
      nvi-tutorials
      HTML
      •
      Apache License 2.0
      •0•0•3•0•Updated Apr 22, 2025Apr 22, 2025

    • DPI

      Public
      Differences between Pairs of Isolates
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•9•0•Updated Apr 12, 2025Apr 12, 2025

    • Assemblage

      Public
      Assembly pipeline for prokaryotic genomes
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•8•0•Updated Apr 8, 2025Apr 8, 2025

    • renv-files

      Public
      Renv files
      0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • INIKA

      Public
      Repository for INIKA project - Code development and sharing
      githubgittutorialrcourserstudioinikawhonet
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Apr 2, 2025Apr 2, 2025

    • nvi-documentation

      Public
      Tutorial page for NVI
      5•1•9•5•Updated Apr 1, 2025Apr 1, 2025

    • DemultiplexRawSequenceData

      Public
      A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
      bioinformaticspython3bioinformatics-pipelinemultiqcbioinformatics-analysisbioinformatics-scriptsfastqcbioinformatics-tool
      Python
      •
      GNU General Public License v3.0
      •0•1•60•0•Updated Mar 27, 2025Mar 27, 2025

    • shinylims

      Public
      A Python Shiny app for LIMS reporting
      Python
      •
      MIT License
      •0•0•6•0•Updated Mar 25, 2025Mar 25, 2025

    • Salmon_snRNAseq_ISAV

      Public
      MIT License
      •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

    • laksetap

      Public
      App for reporting salmon and rainbow trout losses in Norway
      R
      •0•0•2•0•Updated Mar 21, 2025Mar 21, 2025

    • Salmon_snRNAseq_HighLowISAV

      Public
      Salmon_snRNAseq_HighLowISAV
      0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • noRmvet

      Public
      R
      •
      Other
      •0•0•1•0•Updated Mar 17, 2025Mar 17, 2025

    • ALPPACA

      Public
      A tooL for Prokaryotic Phylogeny And Clustering Analysis
      nextflowclusteringphylogenypipeline
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •3•11•5•0•Updated Feb 25, 2025Feb 25, 2025

    • OKcheck

      Public
      Tools to facilitate checking of the data from national surveillance programmes
      R
      •
      Other
      •2•0•1•0•Updated Feb 14, 2025Feb 14, 2025

    • NVI_dynamic_linear_models

      Public
      Repository with R-package for running Dynamic Linear Models
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • NVIpjsr

      Public
      Tools for working with PJSdata
      R
      •
      Other
      •1•0•5•0•Updated Feb 7, 2025Feb 7, 2025

    • NVIpackager

      Public
      Tools to facilitate development of NVIverse packages
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 31, 2025Jan 31, 2025

    • Nepal

      Public
      NExtflow Pipeline for AmpLicons
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•14•0•Updated Jan 30, 2025Jan 30, 2025

    • irida-nvi-serotypefinder

      Public
      Java
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • Salmon_HK_SingleCellSeq

      Public
      Code for running analysis and figures from article: Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics
      MIT License
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • NVIdb

      Public
      R-package to facilitate the use of the Norwegian Veterinary Institute's databases.
      R
      •
      Other
      •1•0•8•0•Updated Jan 3, 2025Jan 3, 2025

    • Bifrost

      Public
      Nextflow
      •
      Other
      •1•2•16•0•Updated Dec 20, 2024Dec 20, 2024

    • irida-plugin-nvi-IRMA

      Public
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Dec 20, 2024Dec 20, 2024

    • NVIpretty

      Public
      Making R-output pretty in accord with NVI design
      R
      •
      Other
      •2•0•4•0•Updated Dec 19, 2024Dec 19, 2024

    • OKplan

      Public
      Tools facilitating the planning of surveillance programmes for the NFSA
      R
      •
      Other
      •1•0•1•0•Updated Dec 19, 2024Dec 19, 2024

    • NVIcheckmate

      Public
      Extension of the R-package checkmate for argument checking adapted to NVIverse
      R
      •
      Other
      •1•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • NVIbatch

      Public
      Tools to facilitate the running R-scripts in batchmode at NVI
      R
      •
      Other
      •1•0•5•0•Updated Dec 13, 2024Dec 13, 2024