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Describe the bug
After the PR that added the common submodule, the common/scripts/create_task_readme script fails in older tasks. Here attempting to run it for the task_perturbation_prediction
To Reproduce
In task_perturbation_prediction:
❯ ./scripts/create_readme.sh
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
Read task metadata
Looking for project root in
'/viash_automount/Users/arturszalata/perturbation_test/task_perturbation_prediction/src/api'
Project root found at
'/viash_automount/Users/arturszalata/perturbation_test/task_perturbation_prediction'
Reading project config
Reading component yamls
Reading file yamls
Generating task graph
Render README.qmd content
Warning message:
Component spec validation failed: 1 error validating api_component_spec object
from source
/viash_automount/Users/arturszalata/perturbation_test/task_perturbation_prediction/src/api/comp_method.yaml:
(#/additionalProperties): must NOT have additional properties
Render authors
Render task graph
Render task API parts
Error in map_chr():
ℹ In index: 5.
Caused by error:
! Failed to evaluate glue component {paste(.render_file_format__example(spec), collapse = '
')}
Caused by error in summarise():
ℹ In argument: str = paste0("'", .data$name, "'", collapse = ", ").
Caused by error in .data$name:
! Column name not found in .data.
Backtrace:
▆
└─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
Expected behavior
expect the README.md to be updated.
The text was updated successfully, but these errors were encountered:
Describe the bug
After the PR that added the common submodule, the
common/scripts/create_task_readme
script fails in older tasks. Here attempting to run it for thetask_perturbation_prediction
To Reproduce
In
task_perturbation_prediction
:❯ ./scripts/create_readme.sh
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
Read task metadata
Looking for project root in
'/viash_automount/Users/arturszalata/perturbation_test/task_perturbation_prediction/src/api'
Project root found at
'/viash_automount/Users/arturszalata/perturbation_test/task_perturbation_prediction'
Reading project config
Reading component yamls
Reading file yamls
Generating task graph
Render README.qmd content
Warning message:
Component spec validation failed: 1 error validating api_component_spec object
from source
/viash_automount/Users/arturszalata/perturbation_test/task_perturbation_prediction/src/api/comp_method.yaml:
Render authors
Render task graph
Render task API parts
Error in
map_chr()
:ℹ In index: 5.
Caused by error:
! Failed to evaluate glue component {paste(.render_file_format__example(spec), collapse = '
')}
Caused by error in
summarise()
:ℹ In argument:
str = paste0("'", .data$name, "'", collapse = ", ")
.Caused by error in
.data$name
:! Column
name
not found in.data
.Backtrace:
▆
<fn>
("paste(.render_file_format__example(spec), collapse = '\n')")$.rlang_data_pronoun
(.data, name)Execution halted
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
Expected behavior
expect the README.md to be updated.
The text was updated successfully, but these errors were encountered: