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[PRE REVIEW]: Seed Database Manager: an open-source tool for germplasm information management #8222

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editorialbot opened this issue May 17, 2025 · 8 comments
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pre-review Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials waitlisted Submissions in the JOSS backlog due to reduced service mode.

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Submitting author: @DingoGoesBingo (Sam Schafer)
Repository: https://github.com/DingoGoesBingo/Seed-Database-Manager
Branch with paper.md (empty if default branch):
Version: v1.1.1
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

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status

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@editorialbot editorialbot added pre-review Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials labels May 17, 2025
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: Breedbase: a digital ecosystem for modern plant br...
- No DOI given, and none found for title: shiny: Web Application Framework for R

❌ MISSING DOIs

- 10.32614/cran.package.rpostgres may be a valid DOI for title: RPostgres: C++ Interface to PostgreSQL
- 10.1093/database/baab054 may be a valid DOI for title: The Breeding Information Management System (BIMS):...
- 10.1007/978-1-59745-535-0_22 may be a valid DOI for title: International crop information system for germplas...
- 10.2135/cropsci2016.09.0814 may be a valid DOI for title: Germinate 3: development of a common platform to s...
- 10.1007/978-981-19-5434-4_2 may be a valid DOI for title: Germplasm management in commercial plant breeding ...

❌ INVALID DOIs

- None

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Software report:

github.com/AlDanial/cloc v 1.98  T=0.02 s (1475.0 files/s, 215294.7 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               13           1284            564           1377
Markdown                         2             92              0            173
Dockerfile                       2             28             24             74
TeX                              1              6              0             59
Text                             4             29              0             47
YAML                             1              1              4             25
CSV                              3              0              0              8
-------------------------------------------------------------------------------
SUM:                            26           1440            592           1763
-------------------------------------------------------------------------------

Commit count by author:

    20	Sam Schafer
    18	DingoGoesBingo

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Paper file info:

📄 Wordcount for paper.md is 1076

✅ The paper includes a Statement of need section

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License info:

🟡 License found: Other (Check here for OSI approval)

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Five most similar historical JOSS papers:

SampleDB: A sample and measurement metadata database
Submitting author: @FlorianRhiem
Handling editor: @arfon (Active)
Reviewers: @stuartcampbell, @dvanic
Similarity score: 0.6868

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Submitting author: @sportiellomike
Handling editor: @csoneson (Active)
Reviewers: @yjunechoe, @jsun
Similarity score: 0.6840

Rdataretriever: R Interface to the Data Retriever
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Reviewers: @rmhogervorst, @jsgalan
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secuTrialR: Seamless interaction with clinical trial databases in R
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Handling editor: @csoneson (Active)
Reviewers: @pacoramon, @sachsmc
Similarity score: 0.6520

neotoma2: An R package to access data from the Neotoma Paleoecology Database
Submitting author: @SimonGoring
Handling editor: @crvernon (Active)
Reviewers: @kanishkan91, @mhesselbarth
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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@arfon arfon added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label May 17, 2025
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arfon commented May 17, 2025

@DingoGoesBingo - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

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