[PRE REVIEW]: SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging

[editorialbot]

Submitting author: @fangliu117 (Fang Liu)
Repository: https://github.com/FNLCR-DMAP/SCSAWorkflow
Branch with paper.md (empty if default branch): paper
Version: v0.8.2
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

Status

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1073/pnas.1300136110 is OK
- 10.21105/joss.06604 is OK
- 10.1016/j.cell.2018.07.010 is OK
- 10.7554/eLife.31657.002 is OK
- 10.1038/s41592-021-01358-2 is OK
- 10.1186/s13059-021-02286-2 is OK
- 10.1158/2326-6066.CIR-21-0015 is OK
- 10.1038/s41467-023-36796-3 is OK
- 10.1016/j.cell.2021.04.048 is OK
- 10.1186/s13059-024-03217-7 is OK
- 10.1038/s41467-023-37822-0 is OK
- 10.1101/2022.07.17.499189 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Code Ocean
- No DOI given, and none found for title: Palantir Foundry Documentation

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.98  T=0.14 s (598.9 files/s, 165493.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          74           3164           5125          12544
Markdown                         4            564              0           1134
TeX                              1             13              0            177
YAML                             4             35              1            177
-------------------------------------------------------------------------------
SUM:                            83           3776           5126          14032
-------------------------------------------------------------------------------

Commit count by author:

   192	fangliu117
   133	ruiheesi
   103	George Zaki
    49	Rui He
    42	Ahmad Abdallah
    18	georgezakinih
     5	ying39purdue
     3	Andrei Bombin
     2	Andree Kolliegbo
     2	Thomas Hu
     2	oeldaghar
     1	Anthony Cusimano
     1	Arshnoor Randhawa
     1	Fang Liu
     1	abombin
     1	semantic-release

[editorialbot]

Paper file info:

⚠️ Wordcount for paper.md is 1227

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

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[arfon]

@fangliu117 - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!