[PRE REVIEW]: FASTQE: sequence quality visualisation with Emoji

[editorialbot]

Submitting author: @lonsbio (Andrew Lonsdale)
Repository: https://github.com/fastqe/fastqe
Branch with paper.md (empty if default branch): joss
Version: v0.3.3
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

Status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/49c10a8f26ebbdfcadcac3d5bcefc732"><img src="https://joss.theoj.org/papers/49c10a8f26ebbdfcadcac3d5bcefc732/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/49c10a8f26ebbdfcadcac3d5bcefc732/status.svg)](https://joss.theoj.org/papers/49c10a8f26ebbdfcadcac3d5bcefc732)

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.02 s (716.5 files/s, 121096.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                           4            190            262            630
Markdown                         3            128              0            371
TeX                              1             18              0            163
HTML                             1             40              2            125
YAML                             3             12             10             77
-------------------------------------------------------------------------------
SUM:                            12            388            274           1366
-------------------------------------------------------------------------------

Commit count by author:

    59	lonsbio
    31	Andrew Lonsdale
     4	Phil Ewels
     2	Clare Sloggett
     1	Frédéric Mahé
     1	Helena Rasche
     1	cjwomack

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1365

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1093/nar/gkp1137 is OK
- 10.1073/pnas.85.8.2444 is OK
- 10.1093/bioinformatics/btp163 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: FastQC
- No DOI given, and none found for title: Quality Control (Galaxy Training Materials)

❌ MISSING DOIs

- 10.1093/bioinformatics/btu170 may be a valid DOI for title: Trimmomatic: a flexible trimmer for Illumina seque...
- 10.12688/f1000research.21142.2 may be a valid DOI for title: Falco: high-speed FastQC emulation for quality con...
- 10.1093/bioinformatics/bty560 may be a valid DOI for title: fastp: an ultra-fast all-in-one FASTQ preprocessor
- 10.24918/cs.2021.17 may be a valid DOI for title: A fun introductory command line lesson: Next gener...

❌ INVALID DOIs

- None

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

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[Kevin-Mattheus-Moerman]

@lonsbio thanks for this submission. Although this work looks well done and maybe useful for some for quick visual inspection of data, we would not classify this as scientific research software (e.g. of such importance that it directly influences scientific findings and that one would feel the need to cite it in subsequent research work). Hence this work is unfortunately not in scope for JOSS.

We will now proceed to reject this submission.

One possible alternative to JOSS is to follow GitHub's guide on how to create a permanent archive and DOI for your software. This DOI can then be used by others to cite your work.

[Kevin-Mattheus-Moerman]

@editorialbot reject

[editorialbot]

Paper rejected.