Skip to content

[PRE REVIEW]: simK: Synthetic Data on Kidney Transplantation #6216

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
editorialbot opened this issue Jan 11, 2024 · 11 comments
Closed

[PRE REVIEW]: simK: Synthetic Data on Kidney Transplantation #6216

editorialbot opened this issue Jan 11, 2024 · 11 comments
Labels
HTML pre-review query-scope Submissions of uncertain scope for JOSS R rejected TeX Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials

Comments

@editorialbot
Copy link
Collaborator

Submitting author: @balima78 (Bruno A Lima)
Repository: https://github.com/txopen/simK
Branch with paper.md (empty if default branch):
Version: v0.2.1
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/81aea7b434cf618344fef7e46826a871"><img src="https://joss.theoj.org/papers/81aea7b434cf618344fef7e46826a871/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/81aea7b434cf618344fef7e46826a871/status.svg)](https://joss.theoj.org/papers/81aea7b434cf618344fef7e46826a871)

Author instructions

Thanks for submitting your paper to JOSS @balima78. Currently, there isn't a JOSS editor assigned to your paper.

@balima78 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands
@editorialbot editorialbot added pre-review Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials labels Jan 11, 2024
@editorialbot
Copy link
Collaborator Author

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

@editorialbot
Copy link
Collaborator Author

Software report:

github.com/AlDanial/cloc v 1.88  T=0.13 s (563.5 files/s, 140382.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JavaScript                       4           2099           1928           7019
HTML                            37           1103            117           3609
TeX                              2             69              9            521
R                               12            148            434            519
YAML                             7             27             10            165
Markdown                         4             67              0            147
XML                              1              0              0            129
Rmd                              4             87            147             66
SVG                              1              0              1             11
CSS                              1              0              0              1
JSON                             1              0              0              1
-------------------------------------------------------------------------------
SUM:                            74           3600           2646          12188
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

@editorialbot
Copy link
Collaborator Author

Wordcount for paper.md is 1368

@editorialbot
Copy link
Collaborator Author

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.21105/joss.04807 is OK
- 10.1016/j.trim.2022.101578 is OK
- 10.32932/pjnh.2020.07.070 is OK
- 10.1371/journal.pdig.0000082 is OK
- 10.1093/jamia/ocx079 is OK
- 10.1186/s12911-019-0793-0 is OK
- 10.1016/j.humimm.2013.06.025 is OK

MISSING DOIs

- None

INVALID DOIs

- None

@editorialbot
Copy link
Collaborator Author

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
Copy link
Collaborator Author

Five most similar historical JOSS papers:

simstudy: Illuminating research methods through data generation
Submitting author: @assignUser
Handling editor: @mikldk (Retired)
Reviewers: @gagolews, @brunaw
Similarity score: 0.8566

graphsim: An R package for simulating gene expression data from graph structures of biological pathways
Submitting author: @TomKellyGenetics
Handling editor: @majensen (Active)
Reviewers: @rcannood, @corybrunson
Similarity score: 0.8157

kep_solver: A Python package for kidney exchange programme exploration
Submitting author: @WPettersson
Handling editor: @jmschrei (Active)
Reviewers: @arianesasso, @igarizio
Similarity score: 0.8084

MCSD: A MATLAB Tool for Monte-Carlo Simulations of Diffusion in biological Tissues
Submitting author: @davidnsousa
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @nnadeau, @mwacaan
Similarity score: 0.8000

secuTrialR: Seamless interaction with clinical trial databases in R
Submitting author: @PatrickRWright
Handling editor: @csoneson (Active)
Reviewers: @pacoramon, @sachsmc
Similarity score: 0.7998

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@Kevin-Mattheus-Moerman
Copy link
Member

@balima78 thanks for this submission to JOSS. I am the AEiC on this track and here to process initial steps. I am currently trying to determine if this work is in scope for JOSS. Could you please clarify what aspects, in terms of lines of code, from the above software report constitutes your original work/contribution? For this type of R-projects typically the core achievement is the R-code itself (here 519 lines), and the JavaScript/HTML code is automatically generated e.g. to enable a GUI/web tool environment. Can you confirm this please?

@balima78
Copy link

@Kevin-Mattheus-Moerman Yes, I confirm that my core achievement is the R-code itself.

@Kevin-Mattheus-Moerman Kevin-Mattheus-Moerman added the query-scope Submissions of uncertain scope for JOSS label Jan 13, 2024
@Kevin-Mattheus-Moerman
Copy link
Member

@balima78 the editorial board have unfortunately concluded that this work is not in scope for JOSS. In particular the small size cause it to not conform to our substantial scholarly effort criteria.

We will now proceed to reject this submission.

Note the above conclusion does not mean the work is not useful or not of a high quality, it merely means that given its rather small size it is not in scope for JOSS.

We do hope you will consider JOSS for any future (re)submissions of a more substantial magnitude.

@Kevin-Mattheus-Moerman
Copy link
Member

@editorialbot reject

@editorialbot
Copy link
Collaborator Author

Paper rejected.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
HTML pre-review query-scope Submissions of uncertain scope for JOSS R rejected TeX Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials
Projects
None yet
Development

No branches or pull requests

3 participants