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Merge pull request #1135 from ontodev/owlapi4526
Update OWL API to 4.5.26
2 parents fa04ed6 + 1e05594 commit 797cc73

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‎CHANGELOG.md

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@@ -11,6 +11,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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- Updated ELK from 0.4.3 to 0.5.0. [#999]. This is an important change as ELK 0.5.0 is more complete than 0.4.3, which means that it will potentially uncover inferences, in particular unsatisfiable classes, which were not recognised by ELK 0.4.3.
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- Add support for pluggable commands [#1119]
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### Changed
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- Migrate to OWL API 4.5.26 to deal with [broken turtle serialiser](https://github.com/ontodev/robot/issues/1129). [#1135]
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- Improvements to `export` and `report` for XLSX format [#1148]
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## [1.9.4] - 2023-05-23
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[`template`]: http://robot.obolibrary.org/template
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[`validate`]: http://robot.obolibrary.org/validate
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[#1148]: https://github.com/ontodev/robot/pull/1148
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[#1135]: https://github.com/ontodev/robot/pull/1135
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[#1119]: https://github.com/ontodev/robot/pull/1119
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[#1100]: https://github.com/ontodev/robot/pull/1100
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[#1091]: https://github.com/ontodev/robot/issues/1091

‎docs/examples/subset_result.owl

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<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
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<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">database_cross_reference</rdfs:label>
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<rdfs:label>database_cross_reference</rdfs:label>
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</owl:AnnotationProperty>
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<!-- http://www.geneontology.org/formats/oboInOwl#id -->
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
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<rdfs:label>id</rdfs:label>
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</owl:AnnotationProperty>
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<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
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<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label>
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<rdfs:label>in_subset</rdfs:label>
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</owl:AnnotationProperty>
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<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
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<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shorthand</rdfs:label>
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<rdfs:label>shorthand</rdfs:label>
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</owl:AnnotationProperty>
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<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
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<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref>
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<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
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<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand>
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<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
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<oboInOwl:hasDbXref>BFO:0000050</oboInOwl:hasDbXref>
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<oboInOwl:id>part_of</oboInOwl:id>
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<oboInOwl:shorthand>part_of</oboInOwl:shorthand>
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</owl:ObjectProperty>
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<!-- http://purl.obolibrary.org/obo/ONT_1 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/ONT_1">
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<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ONT:1</oboInOwl:id>
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<oboInOwl:id>ONT:1</oboInOwl:id>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/test#foo"/>
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</owl:Class>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ONT_1"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ONT:5</oboInOwl:id>
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<oboInOwl:id>ONT:5</oboInOwl:id>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/test#foo"/>
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</owl:Class>
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</rdf:RDF>
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<!-- Generated by the OWL API (version 4.5.9) https://github.com/owlcs/owlapi -->
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<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
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‎pom.xml

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<dependency>
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<groupId>net.sourceforge.owlapi</groupId>
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<artifactId>owlapi-api</artifactId>
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<version>4.5.25</version>
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<version>4.5.26</version>
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<exclusions>
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<exclusion>
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<groupId>com.google.code.findbugs</groupId>
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<dependency>
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<groupId>net.sourceforge.owlapi</groupId>
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<artifactId>owlapi-apibinding</artifactId>
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<version>4.5.25</version>
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<version>4.5.26</version>
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<exclusions>
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<exclusion>
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<groupId>com.google.code.findbugs</groupId>
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<dependency>
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<groupId>net.sourceforge.owlapi</groupId>
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<artifactId>owlapi-rio</artifactId>
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<version>4.5.25</version>
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<version>4.5.26</version>
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<exclusions>
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<exclusion>
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<groupId>com.google.code.findbugs</groupId>

‎robot-core/pom.xml

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<dependency>
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<groupId>net.sourceforge.owlapi</groupId>
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<artifactId>owlapi-api</artifactId>
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<version>4.5.25</version>
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<version>4.5.26</version>
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<exclusions>
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<groupId>com.google.code.findbugs</groupId>
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<dependency>
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<artifactId>owlapi-apibinding</artifactId>
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<version>4.5.25</version>
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<version>4.5.26</version>
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<exclusions>
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<version>4.5.25</version>
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<version>4.5.26</version>
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<exclusions>
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‎robot-core/src/test/resources/subset_result.owl

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<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
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<rdfs:label>database_cross_reference</rdfs:label>
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<!-- http://www.geneontology.org/formats/oboInOwl#id -->
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
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<rdfs:label>id</rdfs:label>
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<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label>
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<rdfs:label>in_subset</rdfs:label>
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<rdfs:label>shorthand</rdfs:label>
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
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<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref>
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<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
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<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand>
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<oboInOwl:hasDbXref>BFO:0000050</oboInOwl:hasDbXref>
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<oboInOwl:id>part_of</oboInOwl:id>
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<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ONT:1</oboInOwl:id>
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<oboInOwl:id>ONT:1</oboInOwl:id>
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<oboInOwl:id>ONT:5</oboInOwl:id>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/test#foo"/>
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</rdf:RDF>

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