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dev-python/pandas: new package, add 2.1.4
Signed-off-by: Andreas Billmeier <[email protected]>
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‎README.md

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@@ -617,14 +617,14 @@ A daily compile test is run at Github with Python 3.9 to catch general faults. E
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## Licenses
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This repository itself is released under GPL-3 (like most Gentoo repositories), all work on the depending components under the licenses they came from. Perhaps you came here because I filed an issue at your component about a bad or missing license. It is easy to [assign a license](https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/adding-a-license-to-a-repository). During cleanups and license investigations I have been asked often which license to choose. I am not a lawyer, but I can offer the following table, counted over this repository, perhaps this helps your decision. If a package has more than one license listed, all of them are counted.
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There are 1774 Ebuilds in total, 1763 of them have in total 1783 (42 different) licenses assigned.
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There are 1775 Ebuilds in total, 1764 of them have in total 1784 (42 different) licenses assigned.
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|License| Ebuilds using it|
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|-------|-----|
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|MIT|1008|
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|Apache-2.0|398|
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|GPL-3|106|
627-
|BSD|102|
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|BSD|103|
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|LGPL-3|25|
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|GPL-2|21|
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|LGPL-3+|14|
@@ -664,9 +664,9 @@ There are 1774 Ebuilds in total, 1763 of them have in total 1783 (42 different)
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|GPL-2+|1|
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|GPL-2-with-linking-exception|1|
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(Last counted: 12/04/2024)
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(Last counted: 17/04/2024)
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I did my best to keep these clean. If a valid license was published on PyPI, it has been automatically merged. Otherwise I took it from GitHub or alternatively from comments/files in the source. Sometimes these differed and have been not unique. All license strings are adjusted to the list in `/usr/portage/gentoo/licenses/`. Some packages do not have any license published. In this case, Authors have been asked for clarification, some did not respond. Following the [official Gentoo Guide](https://devmanual.gentoo.org/general-concepts/licenses/index.html), these then were added with an `all-rights-reserved` license and `RESTRICT="mirror"` was set. Find the appropriate licenses referenced in the Ebuild files and in the corresponding homepages or sources.
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A big thanks goes to Iris for reviewing this README.
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Last updated: 12/04/2024
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Last updated: 17/04/2024

‎dev-python/pandas/Manifest

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AUX pandas-2.1.1-which.patch 393 BLAKE2B d5a988d64efbe28a1d2e533eae2d2ac88a31a08697a112682af1fce07429fff7e7846fe378d6ab487cf8aebf30b357c022763f5fc578e6b90c7ced1ea1af97f1 SHA512 3e7895561aab74e3b3afbad46f371f97fa4ae7b7f8158961896114a9c62e9a4544e81f9cdce983029809a95cc23350bb9698d8b4acc92f34e3a5b844b7811edb
2+
AUX pandas-2.1.4-khash-dep.patch 1970 BLAKE2B fcd7b7426156de6061831a4a88c29a129cd2e860e8df33b44c4824a0dad448f088b0636cf5d9cfbc12894855580be990a30574e3a2374167240bf69239075dd5 SHA512 7a3a4bb61f4578b9a9b32134d5ff4c2772a387fcc77ec3c71a62bf9b33874c51a15e4f9097e922a1ac669cc150acd2d2f6ab086f759b838694105d5fd17a9a31
3+
DIST pandas-2.1.4.tar.gz 4274800 BLAKE2B 71cd374964d5e751a9ea0b29cb341d7de521de8de3bbe0963fc821eb6fa2babf2a5cb87c0f49fab88fd451bd331d83fd216f199c75876d7c1ea367ba53c20178 SHA512 de02944829ea4df6a3913788c2ae30683504d70a1cef5789c927245dab8700981edd50de18af3619d30ac97f4658fce67f6c7637acf496bd464ad3a4109bfd1c
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EBUILD pandas-2.1.4.ebuild 9168 BLAKE2B b7ed84231f112a4ea4106c4690f77d731eab53c89cd5401348bd6b7163bd3b970fc7c20d00f06b558308a2ba14846c1d0236e16f2a1dfdf973a28ae09444e685 SHA512 15f10d843b8a3ca15e024c3e6411d7d23b2d42c762633c922f46835000d6c1b7642a49841f4ef11fa5d97f3aae6e9ad66ca864549fc5e14870953f0c806ce7fb
5+
MISC metadata.xml 920 BLAKE2B d6bd854acdd851d578038657d91adaedf4f220dbdc5905ebba5e35e74437c6d5bc2384061f7796a6f359aa128c526485635debfd0e1a9646d09daed740167c87 SHA512 dcd949e89cae9df918acb3cf8be5ad8c396ee5e646d2179aa2b646fafa15ffc11e9ccf853df8d7fdcc787f88ce7063639d8d87715aaba943774edc8ad98b540a

‎dev-python/pandas/files/pandas-2.1.1-which.patch

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diff --git a/pandas/io/clipboard/__init__.py b/pandas/io/clipboard/__init__.py
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index c07f51d875..14d79fb367 100644
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--- a/pandas/io/clipboard/__init__.py
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+++ b/pandas/io/clipboard/__init__.py
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@@ -87,6 +87,7 @@ else:
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7+
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def _executable_exists(name):
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+ return which(name)
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return (
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subprocess.call(
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[WHICH_CMD, name], stdout=subprocess.PIPE, stderr=subprocess.PIPE

‎dev-python/pandas/files/pandas-2.1.4-khash-dep.patch

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From e31a6865958442435ae9b31f312129c44f66eb5e Mon Sep 17 00:00:00 2001
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From: Ville Aikas <[email protected]>
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Date: Mon, 6 Nov 2023 09:24:40 -0800
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Subject: [PATCH] Add missing dependencies for: _khash_primitive_helper
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(#55795)
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* Add missing dependencies for: _khash_primitive_helper
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Signed-off-by: Ville Aikas <[email protected]>
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* source->dep change.
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Signed-off-by: Ville Aikas <[email protected]>
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* Remove dep from arrays.
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Signed-off-by: Ville Aikas <[email protected]>
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---------
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Signed-off-by: Ville Aikas <[email protected]>
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---
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pandas/_libs/meson.build | 6 +++---
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1 file changed, 3 insertions(+), 3 deletions(-)
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diff --git a/pandas/_libs/meson.build b/pandas/_libs/meson.build
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index b4662d6bf8dd2..c27386743c6e9 100644
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--- a/pandas/_libs/meson.build
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+++ b/pandas/_libs/meson.build
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@@ -61,12 +61,12 @@ subdir('tslibs')
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libs_sources = {
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# Dict of extension name -> dict of {sources, include_dirs, and deps}
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# numpy include dir is implicitly included
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- 'algos': {'sources': ['algos.pyx', _algos_common_helper, _algos_take_helper, _khash_primitive_helper]},
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+ 'algos': {'sources': ['algos.pyx', _algos_common_helper, _algos_take_helper], 'deps': _khash_primitive_helper_dep},
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'arrays': {'sources': ['arrays.pyx']},
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'groupby': {'sources': ['groupby.pyx']},
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'hashing': {'sources': ['hashing.pyx']},
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- 'hashtable': {'sources': ['hashtable.pyx', _khash_primitive_helper, _hashtable_class_helper, _hashtable_func_helper]},
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- 'index': {'sources': ['index.pyx', _index_class_helper]},
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+ 'hashtable': {'sources': ['hashtable.pyx', _hashtable_class_helper, _hashtable_func_helper], 'deps': _khash_primitive_helper_dep},
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+ 'index': {'sources': ['index.pyx', _index_class_helper], 'deps': _khash_primitive_helper_dep},
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'indexing': {'sources': ['indexing.pyx']},
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'internals': {'sources': ['internals.pyx']},
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'interval': {'sources': ['interval.pyx', _intervaltree_helper],

‎dev-python/pandas/metadata.xml

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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="project">
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<email>[email protected]</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<maintainer type="project">
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<email>[email protected]</email>
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</maintainer>
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<longdescription lang="en">
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Pandas is a Python package providing fast, flexible, and expressive
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data structures designed to make working with "relational" or
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"labeled" data both easy and intuitive. It aims to be the
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fundamental high-level building block for doing practical, real
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world data analysis in Python.
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</longdescription>
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<use>
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<flag name="full-support">Pull all packages to give pandas full support</flag>
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</use>
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<upstream>
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<remote-id type="pypi">pandas</remote-id>
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<remote-id type="github">pandas-dev/pandas</remote-id>
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</upstream>
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</pkgmetadata>

‎dev-python/pandas/pandas-2.1.4.ebuild

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# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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DISTUTILS_EXT=1
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DISTUTILS_USE_PEP517=meson-python
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PYTHON_COMPAT=( python3_{11..12} )
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PYTHON_REQ_USE="threads(+)"
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VIRTUALX_REQUIRED="manual"
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inherit distutils-r1 optfeature pypi virtualx
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DESCRIPTION="Powerful data structures for data analysis and statistics"
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HOMEPAGE="
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https://pandas.pydata.org/
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https://github.com/pandas-dev/pandas/
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https://pypi.org/project/pandas/
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"
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SLOT="0"
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LICENSE="BSD"
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KEYWORDS="amd64 arm arm64 x86"
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IUSE="full-support minimal test X"
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RESTRICT="!test? ( test )"
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RECOMMENDED_DEPEND="
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>=dev-python/bottleneck-1.3.4[${PYTHON_USEDEP}]
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>=dev-python/numexpr-2.8.0[${PYTHON_USEDEP}]
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"
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# TODO: add pandas-gbq to the tree
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# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
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# https://github.com/statsmodels/statsmodels/issues/8287
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OPTIONAL_DEPEND="
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>=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
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dev-python/blosc[${PYTHON_USEDEP}]
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>=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
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>=dev-python/jinja-3.1.2[${PYTHON_USEDEP}]
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>=dev-python/lxml-4.8.0[${PYTHON_USEDEP}]
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>=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
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>=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
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>=dev-python/sqlalchemy-1.4.36[${PYTHON_USEDEP}]
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>=dev-python/tables-3.7.0[${PYTHON_USEDEP}]
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>=dev-python/tabulate-0.8.10[${PYTHON_USEDEP}]
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>=dev-python/xarray-2022.3.0[${PYTHON_USEDEP}]
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>=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
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>=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
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>=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
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!arm? ( !hppa? ( !ppc? ( !x86? (
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$(python_gen_cond_dep '
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dev-python/statsmodels[${PYTHON_USEDEP}]
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' python3_{8..10} )
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>=dev-python/scipy-1.8.1[${PYTHON_USEDEP}]
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) ) ) )
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X? (
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|| (
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>=dev-python/PyQt5-5.15.6[${PYTHON_USEDEP}]
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>=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
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x11-misc/xclip
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x11-misc/xsel
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)
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)
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"
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DEPEND="
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<dev-python/numpy-2[${PYTHON_USEDEP}]
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>=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
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"
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COMMON_DEPEND="
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${DEPEND}
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>=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
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>=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
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"
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BDEPEND="
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${COMMON_DEPEND}
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>=dev-build/meson-1.2.1
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>=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
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>=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
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test? (
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${VIRTUALX_DEPEND}
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${RECOMMENDED_DEPEND}
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${OPTIONAL_DEPEND}
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>=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
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>=dev-python/hypothesis-6.46.1[${PYTHON_USEDEP}]
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>=dev-python/openpyxl-3.0.10[${PYTHON_USEDEP}]
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>=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
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>=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
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x11-misc/xclip
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x11-misc/xsel
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)
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"
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RDEPEND="
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${COMMON_DEPEND}
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dev-python/tzdata[${PYTHON_USEDEP}]
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!minimal? ( ${RECOMMENDED_DEPEND} )
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full-support? ( ${OPTIONAL_DEPEND} )
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"
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PATCHES=(
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# a quick hack, it's already fixed in main
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"${FILESDIR}/pandas-2.1.1-which.patch"
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# https://github.com/pandas-dev/pandas/commit/e31a6865958442435ae9b31f312129c44f66eb5e
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"${FILESDIR}/pandas-2.1.4-khash-dep.patch"
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)
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EPYTEST_XDIST=1
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distutils_enable_tests pytest
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src_test() {
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virtx distutils-r1_src_test
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}
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python_test() {
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local EPYTEST_DESELECT=(
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# test for rounding errors, fails if we have better precision
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# e.g. on amd64 with FMA or on arm64
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# https://github.com/pandas-dev/pandas/issues/38921
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tests/window/test_rolling.py::test_rolling_var_numerical_issues
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# TODO; unhappy about DISPLAY?
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tests/test_downstream.py::test_seaborn
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# OOMs
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tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
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# TODO: numexpr says "forbidden control characters"
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tests/computation/test_eval.py::TestOperations::test_multi_line_expression_local_variable
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'tests/computation/test_eval.py::test_query_token[numexpr-Temp(\xb0C)]'
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tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_lots_of_operators_string
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tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_multiple_spaces
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tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_parenthesis
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tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_start_with_spaces
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tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_syntax
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tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_variable_with_in
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tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_nested_scope
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tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_query_scope
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# TODO: missing data not covered by --no-strict-data-files?
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tests/io/xml/test_xml.py::test_empty_stylesheet
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tests/io/xml/test_xml.py::test_wrong_file_path
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# TODO
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tests/frame/test_arithmetic.py::TestFrameFlexArithmetic::test_floordiv_axis0_numexpr_path
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# deprecation warning
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tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2
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'tests/computation/test_eval.py::TestEval::test_scalar_unary[numexpr-pandas]'
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# Needs 64-bit time_t (TODO: split into 32-bit arch only section)
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tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessDay]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessHour]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthEnd]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthBegin]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterEnd]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterBegin]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessDay]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessHour]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthEnd]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthBegin]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthEnd]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthBegin]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthBegin]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthEnd]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-QuarterEnd]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-LastWeekOfMonth]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-WeekOfMonth]'
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'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-Week]'
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# hdf / pytables have alignment problems: bug #911660
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# https://github.com/pandas-dev/pandas/issues/54396
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tests/io/pytables/test_append.py::test_append_frame_column_oriented
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tests/io/pytables/test_store.py::test_select_filter_corner
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# blosc2 version
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tests/io/pytables/test_file_handling.py::test_complibs\[blosc2-{1..9}\]
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)
179+
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case ${EPYTHON} in
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python3.12)
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EPYTEST_DESELECT+=(
183+
tests/io/pytables/test_select.py::test_select_dtypes
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tests/io/pytables/test_select.py::test_frame_select
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# deprecation warnings
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tests/io/excel/test_writers.py::TestRoundTrip::test_read_excel_parse_dates
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# some pytest-xdist problem?
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tests/base/test_unique.py::test_unique_bad_unicode
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)
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;;
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esac
192+
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local -x LC_ALL=C.UTF-8
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cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
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"${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
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# --no-strict-data-files is necessary since upstream prevents data
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# files from even being included in GitHub archives, sigh
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# https://github.com/pandas-dev/pandas/issues/54907
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local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
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epytest pandas/tests \
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--no-strict-data-files \
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-m "not single and not slow and not network" ||
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die "Tests failed with ${EPYTHON}"
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rm test-data.xml || die
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}
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pkg_postinst() {
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optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
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optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
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optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
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optfeature "for msgpack compression using blosc" dev-python/blosc
212+
optfeature "Template engine for conditional HTML formatting" dev-python/jinja
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optfeature "Plotting support" dev-python/matplotlib
214+
optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.10" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
215+
optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.7.0"
216+
optfeature "R I/O support" dev-python/rpy
217+
optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
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optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.36"
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optfeature "miscellaneous statistical functions" dev-python/scipy
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optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
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}

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