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refman.toml
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[project]
title = "oneroof"
description = "Reference files needed for routine runs on viral amplicon data from SARS-CoV-2 and H5N1"
last_modified = "2025-03-19T17:24:04.673076Z"
global = false
[[project.datasets]]
label = "sc2-qiaseq"
fasta = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/sars-cov-2/MN908947.3.fasta"
genbank = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/sars-cov-2/MN908947.3.gbk"
gff = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/sars-cov-2/MN908947.3_corrected_orf1.gff"
bed = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/sars-cov-2/qiaseq_direct_boosted.bed"
[[project.datasets]]
label = "h5n1-B-custom"
fasta = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/H5N1-B.3.13/custom_reference.fasta"
genbank = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/H5N1-B.3.13/annotation-custom.gbk"
bed = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/H5N1-B.3.13/final_truth_no_dashes.bed"
[[project.datasets]]
label = "h5n1-B-segmental"
fasta = "https://dholk.primate.wisc.edu/_webdav/dho/public/DHO%20Lab%20Bespoke%20Reference%20Dataset%20Registry/Pathogen%20Genomics/%40files/H5N1-B.3.13/h5_cattle_genome_root_segments.fasta"