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sites/docs/src/content/docs/usage/Getting_started/offline.md

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@@ -38,7 +38,7 @@ We have created a helper tool as part of the _nf-core_ package to automate this
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On a computer with an internet connection, run `nf-core pipelines download <pipeline>` to download the pipeline.
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Add the argument `--container-system singularity` to also fetch the singularity container(s), and the argument `--download-configuration yes` to also include configuration profiles.
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The pipeline and requirements will be downloaded and configured with their relative paths. With `--compress tar.gz` the files can be packaged into a `.tar.gz` archive. This can then be transferred to your offline system and unpacked.
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The pipeline and requirements will be downloaded. If you used `--download-configuration yes` or `--container-system singularity` together with `container-cache-utilisation copy` the pipeline will be configured with the relative configuration and singularity image paths. However if you defined a shared Singularity image download folder, this configuration will be wrong. With `--compress tar.gz` the files can be packaged into a `.tar.gz` archive. This can then be transferred to your offline system and unpacked.
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Inside, you will see a directory named after the selected release or branch (e.g. `3_5_1` or `dev`) which contains the pipeline files, `configs` (a copy of [nf-core/configs](https://github.com/nf-core/configs) if you used `--download-configuration yes`), and a directory called `singularity-images` (if you used `--container-system singularity` and did't specify another shared singularity image download folder).
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The pipeline code is adjusted by the download tool to expect these relative paths, so as long as you keep them together it should work as is.

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