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maxulysseSPPearce
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Update subworkflows/local/samplesheet_to_channel/main.nf
Co-authored-by: Simon Pearce <[email protected]>
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subworkflows/local/samplesheet_to_channel/main.nf

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@@ -73,7 +73,6 @@ workflow SAMPLESHEET_TO_CHANNEL {
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.map { _patient_sample, num_lanes, ch_items ->
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def (meta, fastq_1, fastq_2, spring_1, spring_2, table, cram, crai, bam, bai, vcf, variantcaller) = ch_items
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if ((meta.lane || meta.lane == 0) && fastq_2) {
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// mapping from fastq files
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meta = meta + [id: "${meta.sample}-${meta.lane}".toString(), data_type: "fastq_gz", num_lanes: num_lanes.toInteger(), size: 1]

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