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lines changed Original file line number Diff line number Diff line change 10
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include { UTILS_NFSCHEMA_PLUGIN } from ' ../../nf-core/utils_nfschema_plugin'
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include { samplesheetToList } from ' plugin/nf-schema'
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+ include { completionEmail } from ' ../../nf-core/utils_nfcore_pipeline'
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+ include { completionSummary } from ' ../../nf-core/utils_nfcore_pipeline'
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+ include { imNotification } from ' ../../nf-core/utils_nfcore_pipeline'
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+ include { paramsSummaryMap } from ' plugin/nf-schema'
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include { UTILS_NFCORE_PIPELINE } from ' ../../nf-core/utils_nfcore_pipeline'
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include { UTILS_NEXTFLOW_PIPELINE } from ' ../../nf-core/utils_nextflow_pipeline'
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include { SAMTOOLS_FAIDX } from ' ../../../modules/nf-core/samtools/faidx'
@@ -330,11 +334,6 @@ workflow PIPELINE_INITIALISATION {
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*/
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- include { completionEmail } from ' ../../nf-core/utils_nfcore_pipeline'
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- include { completionSummary } from ' ../../nf-core/utils_nfcore_pipeline'
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- include { imNotification } from ' ../../nf-core/utils_nfcore_pipeline'
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- include { paramsSummaryMap } from ' plugin/nf-schema'
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-
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workflow PIPELINE_COMPLETION {
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