Add to snapshot

Author: LouisLeNezet

workflows/phaseimpute/tests/main.nf.test

@@ -25,7 +25,12 @@ nextflow_pipeline {
                         .collect { getRecursiveFileNames(it, outputDir) }
                         .flatten(),
                     path("$outputDir/imputation/glimpse1/concat/all.batch0.glimpse1.vcf.gz").vcf.summary.replaceAll(", phasedAutodetect=(false|true)", ""),
-                    path("$outputDir/imputation/glimpse1/concat/all.batch0.glimpse1.vcf.gz").vcf.header.getGenotypeSamples().sort()
+                    path("$outputDir/imputation/glimpse1/concat/all.batch0.glimpse1.vcf.gz").vcf.header.getGenotypeSamples().sort(),
+                    path("${outputDir}/pipeline_info/")
+                        .list()
+                        .collect { getRecursiveFileNames(it, outputDir) }
+                        .flatten()
+                        .collect { removeTimestamp(it) }
                 ).match()
                 }
             )
@@ -299,3 +304,7 @@ def getRecursiveFileNames(fileOrDir, outputDir) {
     }
     return fileOrDir.toString().replace("${outputDir}/", "")
 }
+
+def removeTimestamp(filename) {
+    filename.replaceAll(/_\d{4}-\d{2}-\d{2}_\d{2}-\d{2}-\d{2}/, "")
+}

workflows/phaseimpute/tests/main.nf.test.snap

@@ -408,13 +408,23 @@
                 "NA12878",
                 "NA19401",
                 "NA20359"
+            ],
+            [
+                "pipeline_info/co2footprint_report.html",
+                "pipeline_info/co2footprint_summary.txt",
+                "pipeline_info/co2footprint_trace.txt",
+                "pipeline_info/execution_report.html",
+                "pipeline_info/execution_timeline.html",
+                "pipeline_info/nf_core_pipeline_software_mqc_versions.yml",
+                "pipeline_info/params.json",
+                "pipeline_info/pipeline_dag.html"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.2",
+            "nf-test": "0.9.1",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-27T18:11:44.567996758"
+        "timestamp": "2025-02-20T09:18:56.431336345"
     },
     "Check test_dog": {
         "content": [