Update nextflow XPath test

Author: LouisLeNezet

subworkflows/local/utils_nfcore_phaseimpute_pipeline/main.nf

@@ -541,17 +541,17 @@ def checkMetaChr(chr_a, chr_b, name){
 //
 def getFileExtension(file) {
     def file_name = ""
-
-    if (file instanceof Path || file instanceof nextflow.file.http.XPath) {
+    if (file instanceof Path) {
         file_name = file.name
+    } else if (file instanceof java.net.URL) {
+        file_name = file.path.tokenize('/')[-1]
     } else if (file instanceof CharSequence) {
         file_name = file.toString()
     } else if (file instanceof List) {
         return file.collect { getFileExtension(it) }
     } else {
         error "Type not supported: ${file.getClass()}"
     }
-
     // Remove .gz if present and get the last part after splitting by "."
     return file_name.replace(".gz", "").split("\\.").last()
 }

subworkflows/local/utils_nfcore_phaseimpute_pipeline/tests/function.nf.test

@@ -34,15 +34,18 @@ nextflow_function {
                 """
                 input[0] = [
                     file(params.pipelines_testdata_base_path + "hum_data/panel/chr21/1000GP.chr21.s.norel.vcf.gz", checkIfExists: true),
-                    "test.myfile.txt.gz"
+                    "test.myfile.txt.gz",
+                    new URL("https://example.com/data.tar.gz"),
+                    new URL("https://example.com/subsite/data.vcf"),
+                    nextflow.file.http.XPath.get('http://www.nextflow.io/a/b/c.txt')
                 ]
                 """
             }
         }
         then {
             assertAll(
                 { assert function.success },
-                { assert function.result == ['vcf', 'txt'] },
+                { assert function.result == ['vcf', 'txt', 'tar', 'vcf', 'txt'] },
                 { assert snapshot(function.result).match() }
             )
         }

subworkflows/local/utils_nfcore_phaseimpute_pipeline/tests/function.nf.test.snap

@@ -66,15 +66,18 @@
     "Test getFileExtension non empty list": {
         "content": [
             [
+                "vcf",
+                "txt",
+                "tar",
                 "vcf",
                 "txt"
             ]
         ],
         "meta": {
             "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nextflow": "24.10.4"
         },
-        "timestamp": "2024-10-31T13:15:08.856706046"
+        "timestamp": "2025-03-03T15:47:37.629077209"
     },
     "Test validateInputBatchTools error batch": {
         "content": [