update documentation

Author: Karin Schork

DESCRIPTION

@@ -9,7 +9,7 @@ Description: This package offers a statistics workflows for proteomics data.
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Suggests: 
     testthat (>= 3.0.0),
     vdiffr

NAMESPACE

@@ -6,6 +6,7 @@ export(MA_Plots)
 export(PCA_Plot)
 export(ValidValuePlot)
 export(automatedNormalization)
+export(calculate_onoff)
 export(prepareData)
 export(workflow_QC)
 importFrom(magrittr,"%>%")

R/ValidValuePlot.R

@@ -77,6 +77,7 @@ ValidValuePlot <- function(D_long,
   }
 
 
+  ### TODO: plot sorts samples alphabetically, not by the order it appears in the data set.
 
   message(mess)