Merge pull request #74 from maxplanck-ie/dev_wd

bugfixes relacs, email, install

Author: WardDeb

BRB/demultiplex_relacs.py

@@ -72,6 +72,8 @@ def readSampleTable(sampleTable):
                 continue
 
             sample, barcode, label = elem
+            # sanitize label
+            label = label.replace(' ', '_')
             if sample not in d:
                 d[sample] = dict()
             d[sample][barcode] = label

BRB/email.py

@@ -39,7 +39,7 @@ def finishedEmail(config, msg):
 
     mailer['To'] = recipient
     # Table
-    tabHead = ['Project', 'organism', 'libraryType', 'workflow', 'workflow_status', 'parkour_status', 'sambaUpdate']
+    tabHead = ['Project', 'organism', 'libraryType', 'workflow', 'workflow_status', 'parkour_status', 'sambaUpdate', 'reruns']
     message =  _html.render() + '\n\n' + tabulate(
         msg, tabHead, tablefmt="html", disable_numparse=True
     )

pyproject.toml

@@ -1,6 +1,6 @@
 [build-system]
 requires = ["setuptools >= 61.0", "setuptools_scm>=8"]
-build-backed = "setuptools.build_meta"
+build-backend = "setuptools.build_meta"
 
 [project]
 name = 'BRB'
@@ -44,4 +44,4 @@ lint.ignore = [
   "F841",
   "E712",
   "E741"
-]
+]