Remove references to deprecated submodule jax.abstract_arrays

Use jax.core instead (see jax-ml/jax#16271)

PiperOrigin-RevId: 538767146

Author: Jake VanderPlas

oryx/core/interpreters/harvest.py

@@ -138,7 +138,6 @@ def f(x):
 import functools
 from typing import Any, Callable, Dict, FrozenSet, Hashable, Iterable, List, Optional, Tuple, Union
 
-from jax import abstract_arrays
 from jax import api_util
 from jax import lax
 from jax import linear_util as lu
@@ -419,7 +418,7 @@ def __init__(self, trace: 'HarvestTrace', val: Value):
 
   @property
   def aval(self):
-    return abstract_arrays.raise_to_shaped(jax_core.get_aval(self.val))
+    return jax_core.raise_to_shaped(jax_core.get_aval(self.val))
 
   def full_lower(self):
     return self
@@ -512,7 +511,7 @@ def handle_sow(self, *values, name, tag, tree, mode):
       raise ValueError(f'Variable has already been reaped: {name}')
     avals = tree_util.tree_unflatten(
         tree,
-        [abstract_arrays.raise_to_shaped(jax_core.get_aval(v)) for v in values])
+        [jax_core.raise_to_shaped(jax_core.get_aval(v)) for v in values])
     self.reaps[name] = Reap(
         tree_util.tree_unflatten(tree, values), dict(mode=mode, aval=avals))
     return values
@@ -781,7 +780,7 @@ def _get_harvest_metadata(closed_jaxpr, settings, *args):
     flat_args, in_tree = tree_util.tree_flatten(args)
     flat_fun, out_tree = api_util.flatten_fun_nokwargs(fun, in_tree)
     in_avals = jax_util.safe_map(
-        lambda a: abstract_arrays.raise_to_shaped(jax_core.get_aval(a)),
+        lambda a: jax_core.raise_to_shaped(jax_core.get_aval(a)),
         flat_args)
     pe.trace_to_jaxpr_final(flat_fun, in_avals)
     metadata = aux()

oryx/core/interpreters/inverse/core.py

@@ -17,7 +17,6 @@
 from typing import Iterable
 
 import jax
-from jax import abstract_arrays
 from jax import tree_util
 from jax import util as jax_util
 from jax._src import core as jax_core
@@ -142,7 +141,7 @@ def unknown(cls, aval):
   def new(cls, val):
     val = np.array(val)
     aval = jax_core.get_aval(val)
-    aval = abstract_arrays.raise_to_shaped(aval)
+    aval = jax_core.raise_to_shaped(aval)
     ndslice = NDSlice.new(val, np.zeros_like(val))
     return InverseAndILDJ(aval, frozenset([ndslice]))
 
@@ -319,8 +318,8 @@ def map_ildj(prim, incells, outcells, **params):
   f, incells = incells[0], incells[1:]
 
   def slice_aval(aval):
-    return abstract_arrays.ShapedArray(aval.shape[1:], aval.dtype,
-                                       aval.weak_type)
+    return jax_core.ShapedArray(aval.shape[1:], aval.dtype,
+                                aval.weak_type)
 
   def add_slice(cell, old_cell):
     new_slices = [

oryx/core/ppl/effect_handler_test.py

@@ -15,7 +15,6 @@
 """Tests for oryx.core.ppl.effect_handler."""
 from absl.testing import absltest
 import jax
-from jax import abstract_arrays
 from jax import random
 import jax.numpy as np
 
@@ -40,7 +39,7 @@ def _random_normal_impl(key, loc, scale):
 @random_normal_p.def_abstract_eval
 def _random_normal_abstract(key, loc, scale):
   del key, loc, scale
-  return [abstract_arrays.ShapedArray((), np.float32)]
+  return [jax.core.ShapedArray((), np.float32)]
 
 
 class EffectHandlerTest(test_util.TestCase):

oryx/core/ppl/transformations_test.py

@@ -16,7 +16,6 @@
 from absl.testing import absltest
 
 import jax
-from jax import abstract_arrays
 from jax import random
 from jax._src import core as jax_core
 from jax.interpreters import batching
@@ -61,7 +60,7 @@ def random_normal_impl(rng, *, batch_ndims):
 
 def random_normal_abstract(key, **_):
   del key
-  return abstract_arrays.ShapedArray((), jnp.float32)
+  return jax_core.ShapedArray((), jnp.float32)
 
 
 def random_normal_log_prob_rule(incells, outcells, *, batch_ndims, **_):

oryx/core/primitive.py

@@ -16,7 +16,6 @@
 import itertools as it
 from typing import Callable
 
-from jax import abstract_arrays
 from jax import api_util
 from jax import linear_util as lu
 from jax import tree_util
@@ -237,7 +236,7 @@ def subcall(self, name):
 tie_all_p.multiple_results = True
 tie_all_p.def_impl(lambda *args: args)
 tie_all_p.def_abstract_eval(lambda *args: safe_map(  # pylint: disable=g-long-lambda
-    abstract_arrays.raise_to_shaped, args))
+    jax_core.raise_to_shaped, args))
 
 mlir.register_lowering(tie_all_p, lambda c, *args: args)
 

oryx/core/trace_util.py

@@ -17,7 +17,6 @@
 import threading
 from typing import Any, Dict, Generator, List
 
-from jax import abstract_arrays
 from jax import api_util
 from jax import linear_util as lu
 from jax import tree_util
@@ -41,9 +40,9 @@
 def get_shaped_aval(x):
   """Converts a JAX value type into a shaped abstract value."""
   if hasattr(x, 'dtype') and hasattr(x, 'shape'):
-    return abstract_arrays.ShapedArray(
+    return jax_core.ShapedArray(
         x.shape, dtypes.canonicalize_dtype(x.dtype, allow_opaque_dtype=True))
-  return abstract_arrays.raise_to_shaped(jax_core.get_aval(x))
+  return jax_core.raise_to_shaped(jax_core.get_aval(x))
 
 
 def pv_like(x, abstract=True):