update README.md

Author: phue

README.md

@@ -9,53 +9,50 @@ It currently supports `AlphaFold2`[^1], `AlphaFold-Multimer`[^2], `AlphaFold3`[^
 Moreover, it accumulates and computes various metrics and contains a `py-shiny` application that allows to track pipeline progress and explore results interactively. Three-dimensional visualization of predicted structures therein is implemented via `Mol* Viewer`[^5].
 
 > :warning: 
-AlphaFold3 has a restrictive license and the model weights have to be requested from Google Deepmind. Usage is subject to their [Terms of Use](https://github.com/google-deepmind/alphafold3/blob/main/WEIGHTS_TERMS_OF_USE.md).
+AlphaFold3 has a restrictive license and the model weights have to be requested from Google DeepMind. Usage is subject to their [Terms of Use](https://github.com/google-deepmind/alphafold3/blob/main/WEIGHTS_TERMS_OF_USE.md).
 
 ### Overview
 
 ```mermaid
 flowchart LR
     classDef cpu stroke:#A5B0F2,fill:#A5B0F2
     classDef gpu stroke:#A5F2C1,fill:#A5F2C1
+    subgraph Legend
+        l2([CPU]):::cpu
+        l1([GPU]):::gpu
+    end
+    l1 ~~~ v1
+    l2 ~~~ v1
     subgraph fold2go
         subgraph af2["ALPHAFOLD2"]
             v11([MSA]):::cpu
             v12([INFERENCE]):::gpu
-            v13([METRICS]):::cpu
-        v11 --> v12 --> v13
+        v11 --> v12
         end
         subgraph af3["ALPHAFOLD3"]
             v21([MSA]):::cpu
             v22([INFERENCE]):::gpu
-            v23([METRICS]):::cpu
-        v21 --> v22 --> v23
+        v21 --> v22
         end
         subgraph boltz["BOLTZ-1"]
             v31([MSA]):::cpu
             v32([INFERENCE]):::gpu
-            v33([METRICS]):::cpu
-        v31 --> v32 --> v33
+        v31 --> v32
         end
-    end
+        v12 --> v4
+        v22 --> v4
+        v32 --> v4
+    v4  --tsv--> v5
+    v12 --json,mmcif--> v5
+    v22 --json,mmcif--> v5
+    v32 --npz,mmcif--> v5
     v1(( ))
     v1 ==fasta==> v11
     v1 ==json==> v21
     v1 ==yaml==> v31
-    v4(( ))
+    v4([METRICS]):::cpu
     v5([SHINY])
-    subgraph Legend
-        l2([CPU]):::cpu
-        l1([GPU]):::gpu
     end
-    l1 ~~~ v1
-    l2 ~~~ v1
-    v13 --> v4
-    v23 --> v4
-    v33 --> v4
-    v4  --tsv--> v5
-    v12 --json,mmcif--> v5
-    v22 --json,mmcif--> v5
-    v32 --npz, mmcif--> v5
 ```
 
 ## Usage
@@ -70,7 +67,6 @@ nextflow run imbforge/fold2go --help
 
 This pipeline can be launched through a Jupyterhub-based graphical frontend. If you want to try this out, head over to [imb-alphafold](https://gitlab.rlp.net/imbforge/imb-alphafold).
 
-
 ## References
 
 [^1]: