Fix pyproject.toml + only test tests/

Author: ninamiolane

.github/workflows/test.yml

@@ -51,7 +51,7 @@ jobs:
 
       - name: Run tests [pytest]
         run: |
-          pytest --cov --cov-report=xml:coverage.xml
+          pytest --cov --cov-report=xml:coverage.xml tests/
 
       - name: Upload coverage reports to Codecov
         uses: codecov/[email protected]

pyproject.toml

@@ -39,6 +39,12 @@ dependencies=[
     "scikit-image",
     "scikit-learn",
     "seaborn",
+    "torch",
+    "torchmetrics",
+    "torchinfo",
+    "geomstats @ git+https://github.com/geomstats/geomstats.git",
+    "torchlens @ git+https://github.com/johnmarktaylor91/torchlens.git",
+    "netrep @ git+https://github.com/ahwillia/netrep.git"
 ]
 
 [project.optional-dependencies]
@@ -65,11 +71,6 @@ test = [
     "pandas-stubs",
     "types-requests"
 ]
-torch = [
-    "torch",
-    "torchmetrics",
-    "torchinfo"
-]
 
 dev = ["neurometry[test, lint]"]
 all = ["neurometry[doc, dev]",]
@@ -149,10 +150,6 @@ exclude = [
 [tool.pip]
 extra-index-url = "https://pypi.org/simple"
 
-[[tool.pip.dependencies]]
-name = "black"
-version = "*"
-
 [[tool.pip.dependencies]]
 name = "giotto-ph"
 version = "*"
@@ -161,22 +158,10 @@ version = "*"
 name = "hyperopt"
 version = "0.2.5"
 
-[[tool.pip.dependencies]]
-name = "isort"
-version = "*"
-
 [[tool.pip.dependencies]]
 name = "mat73"
 version = "*"
 
-[[tool.pip.dependencies]]
-name = "pre-commit"
-version = "*"
-
-[[tool.pip.dependencies]]
-name = "pytest"
-version = "*"
-
 [[tool.pip.dependencies]]
 name = "ray[tune]"
 version = "*"
@@ -187,17 +172,4 @@ version = "*"
 
 [[tool.pip.dependencies]]
 name = "mtalg"
-version = "*"
-
-[[tool.pip.dependencies]]
-name = "jupyter-black"
-version = "*"
-
-[tool.pip.dependencies.geomstats]
-git = "https://github.com/geomstats/geomstats.git"
-
-[tool.pip.dependencies.torchlens]
-git = "https://github.com/johnmarktaylor91/torchlens.git"
-
-[tool.pip.dependencies.netrep]
-git = "https://github.com/ahwillia/netrep.git"
+version = "*"