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‎.github/dependabot.yml

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# To get started with Dependabot version updates, you'll need to specify which
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# package ecosystems to update and where the package manifests are located.
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# Please see the documentation for all configuration options:
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# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
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version: 2
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updates:
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- package-ecosystem: "pip"
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directory: "/"
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schedule:
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interval: "monthly"
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- package-ecosystem: "github-actions"
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directory: "/"
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schedule:
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interval: "monthly"
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groups:
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actions:
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patterns:
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- "*"
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labels:
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- "github_actions"

‎.github/release.yml

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changelog:
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exclude:
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authors:
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- dependabot
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- pre-commit-ci

‎.github/workflows/tests.yml

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tags:
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- 'v*'
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pull_request:
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schedule:
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# run every Monday at 5am UTC
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- cron: '0 5 * * 1'
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workflow_dispatch:
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jobs:
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pre-commit:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.8
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uses: actions/setup-python@v1
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with:
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python-version: 3.9
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- uses: pre-commit/[email protected]
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tests:
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-latest]
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python-version: ["3.7", "3.8", "3.9", "3.10"]
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sphinx: [">=5,<6"]
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python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
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sphinx: [""] # Newest Sphinx (any)
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myst-parser: [""] # Newest MyST Parser (any)
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include:
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- os: ubuntu-latest
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python-version: 3.7
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sphinx: ">=4,<5"
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# Just check the other platforms once
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- os: windows-latest
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python-version: 3.8
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sphinx: ">=5,<6"
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python-version: "3.12"
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sphinx: "~=8.0"
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myst-parser: "~=4.0"
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pillow: "==11.0.0"
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- os: macos-latest
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python-version: 3.8
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sphinx: ">=5,<6"
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python-version: "3.12"
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sphinx: "~=8.0"
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myst-parser: "~=4.0"
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pillow: "==11.0.0"
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- os: ubuntu-latest
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python-version: "3.12"
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sphinx: "~=8.0"
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myst-parser: "~=4.0"
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pillow: "==11.0.0"
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# Oldest known-compatible dependencies
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- os: ubuntu-latest
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python-version: "3.9"
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sphinx: "==5.0.0"
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myst-parser: "==1.0.0"
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pillow: "==11.0.0"
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# Mid-range dependencies
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- os: ubuntu-latest
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python-version: "3.11"
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sphinx: "==7.0.0"
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myst-parser: "==3.0.0"
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pillow: "==11.0.0"
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# Newest known-compatible dependencies
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- os: ubuntu-latest
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python-version: "3.12"
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sphinx: "==8.0.2"
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myst-parser: "==4.0.0"
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pillow: "==11.0.0"
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runs-on: ${{ matrix.os }}
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v4
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v1
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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allow-prereleases: true
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cache: pip
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- name: Install myst-nb with Sphinx ${{ matrix.sphinx }}
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shell: bash
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run: |
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pip install --upgrade "Sphinx${{ matrix.sphinx }}" "myst-parser${{ matrix.myst-parser }}" "pillow${{ matrix.pillow }}" -e .[testing]
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pip freeze
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- name: Run pytest
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run: pytest --durations=10
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coverage:
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needs: [tests]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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cache: pip
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install "sphinx${{ matrix.sphinx }}"
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pip install -e .[testing]
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pip freeze
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- name: Run pytest
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run: pytest --durations=10 --cov=myst_nb --cov-report=xml --cov-report=term-missing
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# for some reason the tests/conftest.py::check_nbs fixture breaks pytest-cov's cov-report outputting
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# this is why we run `coverage xml` afterwards (required by codecov)
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# TEMPORARY FIX: Disable codecov until we can get it working again
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- name: Upload to Codecov
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if: github.repository == 'executablebooks/MyST-NB' && matrix.python-version == '3.9' && matrix.os == 'ubuntu-latest'
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uses: codecov/codecov-action@v3
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uses: codecov/codecov-action@v4
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if: false
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with:
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name: myst-nb-pytests
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flags: pytests
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files: ./coverage.xml
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fail_ci_if_error: true
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publish:
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name: Publish to PyPi
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needs: [pre-commit, tests]
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needs: [tests]
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if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
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runs-on: ubuntu-latest
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steps:
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- name: Checkout source
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uses: actions/checkout@v2
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uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v1
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uses: actions/setup-python@v5
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with:
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python-version: 3.8
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python-version: "3.10"
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- name: install flit
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run: |
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pip install flit~=3.4

‎.github/workflows/tests_devdeps.yml

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name: continuous-integration-devdeps
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on:
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push:
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branches: [master]
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schedule:
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# run every Monday at 5am UTC
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- cron: '0 5 * * 1'
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workflow_dispatch:
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jobs:
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tests:
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strategy:
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fail-fast: false
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matrix:
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sphinx: [""] # Newest Sphinx (any)
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myst-parser: [""] # Newest MyST Parser (any)
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python 3.12
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uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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cache: pip
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- name: Install myst-nb with development Sphinx and myst-parser versions
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run: |
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pip install --upgrade pip
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pip install --upgrade git+https://github.com/executablebooks/MyST-Parser.git#egg=myst-parser git+https://github.com/sphinx-doc/sphinx.git#egg=sphinx -e .[testing]
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- name: Run pytest
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run: pytest --durations=10

‎.pre-commit-config.yaml

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tests/.*\.txt
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)$
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ci:
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autoupdate_schedule: 'monthly'
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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v4.4.0
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rev: v5.0.0
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hooks:
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- id: check-json
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- id: check-yaml
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- id: end-of-file-fixer
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- id: trailing-whitespace
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- id: check-added-large-files
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- id: check-case-conflict
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- id: check-merge-conflict
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- id: mixed-line-ending
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- id: trailing-whitespace
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- repo: https://github.com/asottile/pyupgrade
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rev: v3.3.1
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hooks:
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- id: pyupgrade
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args: [--py37-plus]
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- repo: https://github.com/PyCQA/isort
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rev: 5.12.0
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hooks:
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- id: isort
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- repo: https://github.com/psf/black
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rev: 23.3.0
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hooks:
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- id: black
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- repo: https://github.com/PyCQA/flake8
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rev: 6.0.0
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.11.4
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hooks:
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- id: flake8
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additional_dependencies: [flake8-bugbear]
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- id: ruff
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args: ["--fix", "--show-fixes"]
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- id: ruff-format
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- repo: https://github.com/pre-commit/mirrors-mypy
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rev: v1.2.0
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rev: v1.15.0
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hooks:
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- id: mypy
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args: [--config-file=pyproject.toml]
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additional_dependencies:
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- importlib_metadata
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- myst-parser~=0.18.0
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- "sphinx~=5.0"
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- myst-parser~=2.0.0
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- "sphinx~=7.3.7"
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- nbclient
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- types-PyYAML
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files: >
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(?x)^(
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myst_nb/.+\.py|
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)$
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- repo: https://github.com/codespell-project/codespell
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rev: v2.4.1
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hooks:
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- id: codespell
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args: ["-S", "*.ipynb"]

‎.readthedocs.yml

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build:
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os: ubuntu-22.04
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tools:
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python: "3.11"
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version: "3.8"
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- method: pip
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path: .
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- requirements: docs/requirements.txt
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sphinx:
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configuration: docs/conf.py
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builder: html
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fail_on_warning: true

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