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Merge pull request #54 from eli5-org/fix-outdated-gh-links
fix outdated github links
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README.rst

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.. _lightning: https://github.com/scikit-learn-contrib/lightning
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.. _scikit-learn: https://github.com/scikit-learn/scikit-learn
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.. _sklearn-crfsuite: https://github.com/TeamHG-Memex/sklearn-crfsuite
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.. _sklearn-crfsuite: https://github.com/scrapinghub/sklearn-crfsuite
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.. _LIME: https://eli5.readthedocs.io/en/latest/blackbox/lime.html
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.. _TextExplainer: https://eli5.readthedocs.io/en/latest/tutorials/black-box-text-classifiers.html
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.. _xgboost: https://github.com/dmlc/xgboost

docs/source/_notebooks/debug-sklearn-crfsuite.rst

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In this notebook we train a basic CRF model for Named Entity Recognition
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on CoNLL2002 data (following
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https://github.com/TeamHG-Memex/sklearn-crfsuite/blob/master/docs/CoNLL2002.ipynb)
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https://github.com/eli5-org/sklearn-crfsuite/blob/master/docs/CoNLL2002.ipynb)
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and check its weights to see what it learned.
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To follow this tutorial you need NLTK > 3.x and sklearn-crfsuite Python

docs/source/_notebooks/text-explainer.rst

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strategy which works for many real-world tasks could be a research topic
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on itself. If you’ve got some experience with it we’d love to hear from
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you - please share your findings in eli5 issue tracker (
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https://github.com/TeamHG-Memex/eli5/issues )!
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https://github.com/eli5-org/eli5/issues )!
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Customizing TextExplainer: classifier
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-------------------------------------

docs/source/_notebooks/xgboost-titanic.rst

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We are using `XGBoost <https://xgboost.readthedocs.io/en/latest/>`__
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0.81 and data downloaded from https://www.kaggle.com/c/titanic/data (it
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is also bundled in the eli5 repo:
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https://github.com/TeamHG-Memex/eli5/blob/master/notebooks/titanic-train.csv).
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https://github.com/eli5-org/eli5/blob/master/notebooks/titanic-train.csv).
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1. Training data
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----------------

docs/source/blackbox/lime.rst

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:ref:`TextExplainer tutorial <lime-tutorial>`. API reference is available
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:mod:`here <eli5.lime>`. Currently eli5 doesn't provide a lot of helpers
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for LIME + non-text data, but there is an IPyhton
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`notebook <https://github.com/TeamHG-Memex/eli5/blob/master/notebooks/LIME%20and%20synthetic%20data.ipynb>`__
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`notebook <https://github.com/eli5-org/eli5/blob/master/notebooks/LIME%20and%20synthetic%20data.ipynb>`__
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with an example of applying LIME for such tasks.
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Caveats

docs/source/contribute.rst

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ELI5 uses MIT license; contributions are welcome!
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* Source code: https://github.com/TeamHG-Memex/eli5
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* Issue tracker: https://github.com/TeamHG-Memex/eli5/issues
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* Source code: https://github.com/eli5-org/eli5
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* Issue tracker: https://github.com/eli5-org/eli5/issues
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ELI5 supports Python 3.9+.
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To run tests make sure tox_ Python package is installed, then run

docs/source/index.rst

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:target: https://github.com/eli5-org/eli5/actions
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:alt: Build Status
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.. image:: https://codecov.io/github/TeamHG-Memex/eli5/coverage.svg?branch=master
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:target: https://codecov.io/github/TeamHG-Memex/eli5?branch=master
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.. image:: https://codecov.io/github/eli5-org/eli5/coverage.svg?branch=master
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:target: https://codecov.io/github/eli5-org/eli5?branch=master
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:alt: Code Coverage
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ELI5_ is a Python library which allows to visualize and debug
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License is MIT.
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.. _ELI5: https://github.com/TeamHG-Memex/eli5
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.. _ELI5: https://github.com/eli5-org/eli5

docs/source/libraries/sklearn.rst

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OneVsRestClassifier_ by dispatching to the explanation function for
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OvR base estimator, and then calling this function for the
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OneVsRestClassifier instance. This works in many cases, but not for all.
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Please report issues to https://github.com/TeamHG-Memex/eli5/issues.
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Please report issues to https://github.com/eli5-org/eli5/issues.
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.. _OneVsRestClassifier: http://scikit-learn.org/stable/modules/generated/sklearn.multiclass.OneVsRestClassifier.html

docs/source/libraries/sklearn_crfsuite.rst

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a higher-level API for python-crfsuite_; python-crfsuite_ is a Python binding
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for CRFSuite_ C++ library.
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.. _sklearn-crfsuite: https://github.com/TeamHG-Memex/sklearn-crfsuite
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.. _sklearn-crfsuite: https://github.com/scrapinghub/sklearn-crfsuite
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.. _python-crfsuite: https://github.com/scrapinghub/python-crfsuite
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.. _CRFSuite: https://github.com/chokkan/crfsuite
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docs/source/overview.rst

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.. _lightning: https://github.com/scikit-learn-contrib/lightning
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.. _scikit-learn: https://github.com/scikit-learn/scikit-learn
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.. _sklearn-crfsuite: https://github.com/TeamHG-Memex/sklearn-crfsuite
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.. _ELI5: https://github.com/TeamHG-Memex/eli5
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.. _sklearn-crfsuite: https://github.com/scrapinghub/sklearn-crfsuite
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.. _ELI5: https://github.com/eli5-org/eli5
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.. _xgboost: https://github.com/dmlc/xgboost
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.. image:: static/char-ngrams.png
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To learn more, follow the :ref:`Tutorials`, check example IPython
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`notebooks <https://github.com/TeamHG-Memex/eli5/tree/master/notebooks>`_
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`notebooks <https://github.com/eli5-org/eli5/tree/master/notebooks>`_
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and read documentation specific to your framework in the
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:ref:`supported-libraries` section.
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docs/source/tutorials/black-box-text-classifiers.rst

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This tutorial can be run as an IPython notebook_.
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.. _notebook: https://github.com/TeamHG-Memex/eli5/blob/master/notebooks/TextExplainer.ipynb
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.. _notebook: https://github.com/eli5-org/eli5/blob/master/notebooks/TextExplainer.ipynb
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.. include:: ../_notebooks/text-explainer.rst

docs/source/tutorials/keras-image-classifiers.rst

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This tutorial is intended to be run in an IPython notebook.
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It is also available as a notebook file here_.
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.. _here: https://github.com/eli5-org/eli5/blob/master/notebooks/keras-image-classifiers.ipynb
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docs/source/tutorials/sklearn-text.rst

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This tutorial is intended to be run in an IPython notebook.
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It is also available as a notebook file here_.
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.. _here: https://github.com/eli5-org/eli5/blob/master/notebooks/Debugging%20scikit-learn%20text%20classification%20pipeline.ipynb
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docs/source/tutorials/sklearn_crfsuite.rst

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This tutorial can be run as an IPython notebook_.
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.. _notebook: https://github.com/eli5-org/eli5/blob/master/notebooks/sklearn-crfsuite.ipynb
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docs/source/tutorials/xgboost-titanic.rst

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This tutorial is intended to be run in an IPython notebook.
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.. _here: https://github.com/eli5-org/eli5/blob/master/notebooks/xboost-titanic.ipynb
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.. include:: ../_notebooks/xgboost-titanic.rst

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