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‎.gitignore

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jar/
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*.class

‎CHANGES

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‎LICENSE

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Most of MASON is licensed under the Academic Free License, version 3.0,
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with the exception of the following files:
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PngEncoder.java Artistic License
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MovieEncoder.java [Partial] Sun Open Source License
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WireFrameBoxPortrayal3D.java [Partial] Sun Open Source License
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ToolTipBehavior.java [Partial] Sun Open Source License
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SelectionBehavior.java [Partial] Sun Open Source License
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GullCG.java Sun Open Source License
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MersenneTwisterFast.java BSD License
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For all remaining files, the Academic Free License is specified below.
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Academic Free License ("AFL") v. 3.0
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This Academic Free License (the "License") applies to any original work
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of authorship (the "Original Work") whose owner (the "Licensor") has
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placed the following licensing notice adjacent to the copyright notice
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for the Original Work:
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Licensed under the Academic Free License version 3.0
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1) Grant of Copyright License. Licensor grants You a worldwide,
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royalty-free, non-exclusive, sublicensable license, for the duration of
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the copyright, to do the following:
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a) to reproduce the Original Work in copies, either alone or as
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part of a collective work;
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b) to translate, adapt, alter, transform, modify, or arrange the
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Original Work, thereby creating derivative works ("Derivative
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Works") based upon the Original Work;
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c) to distribute or communicate copies of the Original Work and
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Derivative Works to the public, UNDER ANY LICENSE OF YOUR
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CHOICE THAT DOES NOT CONTRADICT THE TERMS AND CONDITIONS,
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INCLUDING LICENSOR'S RESERVED RIGHTS AND REMEDIES, IN THIS
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ACADEMIC FREE LICENSE;
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d) to perform the Original Work publicly; and
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e) to display the Original Work publicly.
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2) Grant of Patent License. Licensor grants You a worldwide,
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royalty-free, non-exclusive, sublicensable license, under patent claims
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owned or controlled by the Licensor that are embodied in the Original
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Work as furnished by the Licensor, for the duration of the patents, to
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make, use, sell, offer for sale, have made, and import the Original Work
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and Derivative Works.
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3) Grant of Source Code License. The term "Source Code" means the
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preferred form of the Original Work for making modifications to it and
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all available documentation describing how to modify the Original Work.
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Licensor agrees to provide a machine-readable copy of the Source Code of
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the Original Work along with each copy of the Original Work that
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Licensor distributes. Licensor reserves the right to satisfy this
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obligation by placing a machine-readable copy of the Source Code in an
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information repository reasonably calculated to permit inexpensive and
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convenient access by You for as long as Licensor continues to distribute
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the Original Work.
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4) Exclusions From License Grant. Neither the names of Licensor, nor the
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names of any contributors to the Original Work, nor any of their
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trademarks or service marks, may be used to endorse or promote products
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derived from this Original Work without express prior permission of the
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Licensor. Except as expressly stated herein, nothing in this License
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grants any license to Licensor's trademarks, copyrights, patents, trade
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secrets or any other intellectual property. No patent license is granted
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to make, use, sell, offer for sale, have made, or import embodiments of
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any patent claims other than the licensed claims defined in Section 2.
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No license is granted to the trademarks of Licensor even if such marks
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are included in the Original Work. Nothing in this License shall be
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interpreted to prohibit Licensor from licensing under terms different
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from this License any Original Work that Licensor otherwise would have a
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right to license.
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5) External Deployment. The term "External Deployment" means the use,
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distribution, or communication of the Original Work or Derivative Works
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in any way such that the Original Work or Derivative Works may be used
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by anyone other than You, whether those works are distributed or
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communicated to those persons or made available as an application
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intended for use over a network. As an express condition for the grants
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of license hereunder, You must treat any External Deployment by You of
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the Original Work or a Derivative Work as a distribution under section
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1(c).
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6) Attribution Rights. You must retain, in the Source Code of any
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Derivative Works that You create, all copyright, patent, or trademark
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notices from the Source Code of the Original Work, as well as any
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notices of licensing and any descriptive text identified therein as an
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"Attribution Notice." You must cause the Source Code for any Derivative
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Works that You create to carry a prominent Attribution Notice reasonably
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Work.
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that the copyright in and to the Original Work and the patent rights
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granted herein by Licensor are owned by the Licensor or are sublicensed
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to You under the terms of this License with the permission of the
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contributor(s) of those copyrights and patent rights. Except as
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expressly stated in the immediately preceding sentence, the Original
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Work is provided under this License on an "AS IS" BASIS and WITHOUT
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WARRANTY, either express or implied, including, without limitation, the
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warranties of non-infringement, merchantability or fitness for a
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particular purpose. THE ENTIRE RISK AS TO THE QUALITY OF THE ORIGINAL
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WORK IS WITH YOU. This DISCLAIMER OF WARRANTY constitutes an essential
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part of this License. No license to the Original Work is granted by this
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License except under this disclaimer.
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8) Limitation of Liability. Under no circumstances and under no legal
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theory, whether in tort (including negligence), contract, or otherwise,
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shall the Licensor be liable to anyone for any indirect, special,
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incidental, or consequential damages of any character arising as a
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result of this License or the use of the Original Work including,
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without limitation, damages for loss of goodwill, work stoppage,
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computer failure or malfunction, or any and all other commercial damages
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or losses. This limitation of liability shall not apply to the extent
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applicable law prohibits such limitation.
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9) Acceptance and Termination. If, at any time, You expressly assented
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to this License, that assent indicates your clear and irrevocable
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acceptance of this License and all of its terms and conditions. If You
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distribute or communicate copies of the Original Work or a Derivative
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Work, You must make a reasonable effort under the circumstances to
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obtain the express assent of recipients to the terms of this License.
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This License conditions your rights to undertake the activities listed
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in Section 1, including your right to create Derivative Works based upon
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the Original Work, and doing so without honoring these terms and
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conditions is prohibited by copyright law and international treaty.
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Nothing in this License is intended to affect copyright exceptions and
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limitations (including "fair use" or "fair dealing"). This License shall
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terminate immediately and You may no longer exercise any of the rights
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granted to You by this License upon your failure to honor the conditions
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in Section 1(c).
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10) Termination for Patent Action. This License shall terminate
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automatically and You may no longer exercise any of the rights granted
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to You by this License as of the date You commence an action, including
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a cross-claim or counterclaim, against Licensor or any licensee alleging
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that the Original Work infringes a patent. This termination provision
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shall not apply for an action alleging patent infringement by
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combinations of the Original Work with other software or hardware.
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11) Jurisdiction, Venue and Governing Law. Any action or suit relating
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to this License may be brought only in the courts of a jurisdiction
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wherein the Licensor resides or in which Licensor conducts its primary
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business, and under the laws of that jurisdiction excluding its
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conflict-of-law provisions. The application of the United Nations
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Convention on Contracts for the International Sale of Goods is expressly
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excluded. Any use of the Original Work outside the scope of this License
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or after its termination shall be subject to the requirements and
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penalties of copyright or patent law in the appropriate jurisdiction.
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This section shall survive the termination of this License.
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12) Attorneys' Fees. In any action to enforce the terms of this License
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or seeking damages relating thereto, the prevailing party shall be
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entitled to recover its costs and expenses, including, without
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limitation, reasonable attorneys' fees and costs incurred in connection
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with such action, including any appeal of such action. This section
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shall survive the termination of this License.
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13) Miscellaneous. If any provision of this License is held to be
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unenforceable, such provision shall be reformed only to the extent
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necessary to make it enforceable.
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14) Definition of "You" in This License. "You" throughout this License,
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whether in upper or lower case, means an individual or a legal entity
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exercising rights under, and complying with all of the terms of, this
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License. For legal entities, "You" includes any entity that controls, is
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controlled by, or is under common control with you. For purposes of this
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definition, "control" means (i) the power, direct or indirect, to cause
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the direction or management of such entity, whether by contract or
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otherwise, or (ii) ownership of fifty percent (50%) or more of the
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outstanding shares, or (iii) beneficial ownership of such entity.
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15) Right to Use. You may use the Original Work in all ways not
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otherwise restricted or conditioned by this License or by law, and
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Licensor promises not to interfere with or be responsible for such uses
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by You.
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16) Modification of This License. This License is Copyright (c) 2005
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Lawrence Rosen. Permission is granted to copy, distribute, or
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communicate this License without modification. Nothing in this License
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permits You to modify this License as applied to the Original Work or to
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Derivative Works. However, You may modify the text of this License and
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copy, distribute or communicate your modified version (the "Modified
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License") and apply it to other original works of authorship subject to
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the following conditions: (i) You may not indicate in any way that your
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Modified License is the "Academic Free License" or "AFL" and you may not
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use those names in the name of your Modified License; (ii) You must
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replace the notice specified in the first paragraph above with the
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notice "Licensed under <insert your license name here>" or with a notice
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of your own that is not confusingly similar to the notice in this
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License; and (iii) You may not claim that your original works are open
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source software unless your Modified License has been approved by Open
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Source Initiative (OSI) and You comply with its license review and
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certification process.
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‎Makefile

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### MASON Makefile
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#### By Sean Luke
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#### Relevant Stuff:
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#### To see all your make options: type make help
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#### To add flags (like -O) to javac: change the FLAGS variable below
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JAVAC = javac ${FLAGS}
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FLAGS = -target 1.5 -source 1.5 -g -nowarn
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VERSION = 18
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# Main java files, not including the 3D stuff
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DIRS = \
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sim/app/heatbugs/*.java\
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sim/app/hexabugs/*.java \
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sim/app/asteroids/*.java \
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sim/app/antsforage/*.java \
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sim/app/virus/*.java \
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sim/app/cto/*.java \
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sim/app/woims/*.java \
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sim/app/mav/*.java \
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sim/app/mousetraps/*.java \
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sim/app/networktest/*.java \
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sim/app/keepaway/*.java \
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sim/app/lsystem/*.java \
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sim/app/lightcycles/*.java \
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sim/app/swarmgame/*.java \
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sim/app/flockers/*.java \
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sim/app/tutorial1and2/*.java \
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sim/app/tutorial3/*.java \
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sim/app/tutorial4/*.java \
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sim/app/tutorial5/*.java \
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sim/app/schelling/*.java \
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sim/app/pacman/*.java \
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sim/app/pso/*.java \
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sim/app/wcss/tutorial0*/*.java \
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sim/app/wcss/tutorial10/*.java \
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sim/app/wcss/tutorial11/*.java \
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sim/app/wcss/tutorial12/*.java \
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sim/app/wcss/tutorial13/*.java \
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sim/display/*.java \
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sim/engine/*.java \
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sim/util/*.java \
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sim/util/media/*.java \
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sim/util/media/chart/*.java \
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sim/util/gui/*.java \
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sim/util/distribution/*.java \
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sim/field/*.java \
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sim/field/grid/*.java \
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sim/field/continuous/*.java \
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sim/field/network/*.java \
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sim/portrayal/*.java \
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sim/portrayal/grid/*.java \
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sim/portrayal/continuous/*.java \
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sim/portrayal/network/*.java \
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sim/portrayal/simple/*.java \
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sim/portrayal/inspector/*.java \
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ec/util/*.java \
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# The additional 3D java files
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3DDIRS = \
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sim/app/heatbugs3d/*.java \
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sim/app/woims3d/*.java \
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sim/app/mousetraps3d/*.java \
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sim/app/crowd3d/*.java \
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sim/app/balls3d/*.java \
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sim/app/celegans/*.java \
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sim/app/particles3d/*.java \
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sim/app/pso3d/*.java \
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sim/app/tutorial6/*.java \
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sim/app/tutorial7/*.java \
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sim/app/celegans/*.java \
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sim/app/wcss/tutorial14/*.java \
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sim/portrayal3d/*.java \
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sim/portrayal3d/simple/*.java \
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sim/portrayal3d/grid/*.java \
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sim/portrayal3d/grid/quad/*.java \
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sim/portrayal3d/continuous/*.java \
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sim/portrayal3d/network/*.java \
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sim/portrayal3d/inspector/*.java \
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sim/display3d/*.java \
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# Make the main MASON code, not including 3D code
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all:
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@ echo This makes the 2D MASON code.
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@ echo To learn about other options, type 'make help'
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@ echo
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${JAVAC} ${DIRS}
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# Make the main MASON code AND the 3D code
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3d:
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${JAVAC} ${DIRS} ${3DDIRS}
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# Delete all jmf gunk, checkpoints, backup emacs gunk classfiles,
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# documentation, and odd MacOS X poops
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clean:
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find . -name "*.class" -exec rm -f {} \;
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find . -name "jmf.log" -exec rm -f {} \;
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find . -name ".DS_Store" -exec rm -f {} \;
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find . -name "*.checkpoint" -exec rm -f {} \;
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find . -name "*.java*~" -exec rm -f {} \;
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find . -name ".#*" -exec rm -rf {} \;
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rm -rf jar/*.jar docs/classdocs/resources docs/classdocs/ec docs/classdocs/sim docs/classdocs/*.html docs/classdocs/*.css docs/classdocs/package*
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# Build the class docs. They're located in docs/classdocs
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doc:
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javadoc -classpath . -protected -d docs/classdocs sim.display sim.engine sim.util sim.util.gui sim.util.media sim.util.media.chart sim.field sim.field.grid sim.field.continuous sim.field.network sim.portrayal sim.portrayal.grid sim.portrayal.continuous sim.portrayal.network sim.portrayal.simple ec.util sim.portrayal3d sim.portrayal3d.grid sim.portrayal3d.continuous sim.portrayal3d.simple sim.portrayal3d.grid.quad sim.display3d sim.util.distribution
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docs: doc
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# Build an applet jar file. Note this collects ALL .class, .png, .jpg, index.html, and simulation.classes
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# files. you'll probably want to strip this down some.
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jar: 3d
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touch /tmp/manifest.add
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rm /tmp/manifest.add
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echo "Main-Class: sim.display.Console" > /tmp/manifest.add
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jar -cvfm jar/mason.${VERSION}.jar /tmp/manifest.add `find . -name "*.class"` `find sim -name "*.jpg"` `find sim -name "*.png"` `find sim -name "*.pbm"` `find sim -name "index.html"` sim/display/simulation.classes sim/portrayal/inspector/propertyinspector.classes
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# Build a distribution. Cleans, builds 3d, then builds docs, then
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# removes SVN directories
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dist: clean 3d indent doc jar
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touch TODO
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rm TODO
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find . -name ".svn" -exec rm -rf {} \;
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@ echo "If there were SVN directories, expect this to end in an error."
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@ echo "Don't worry about it, things are still fine."
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# Indent to your preferred brace format using emacs. MASON's default
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# format is Whitesmiths at 4 spaces. Yes, I know. Idiosyncratic.
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# Anyway, beware that this is quite slow. But it works!
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indent:
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touch ${HOME}/.emacs
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find . -name "*.java" -print -exec emacs --batch --load ~/.emacs --eval='(progn (find-file "{}") (mark-whole-buffer) (setq indent-tabs-mode nil) (untabify (point-min) (point-max)) (indent-region (point-min) (point-max) nil) (save-buffer))' \;
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# Print a help message
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help:
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@ echo MASON Makefile options
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@ echo
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@ echo "make Builds the model core, utilities, and 2D code/apps only"
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@ echo "make all (Same thing)"
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@ echo "make 3d Builds the model core, utilities, and both 2D and 3D code/apps"
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@ echo "make docs Builds the class documentation, found in docs/classsdocs"
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@ echo "make doc (Same thing)"
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@ echo "make clean Cleans out all classfiles, checkpoints, and various gunk"
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@ echo "make dist Does a make clean, make docs, and make 3d, then deletes SVN dirs"
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@ echo "make jar Makes 3d, then collects ALL class files into a jar file"
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@ echo " called mason.jar. Heavyweight -- all class files included."
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@ echo "make help Brings up this message!"
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@ echo "make indent Uses emacs to re-indent MASON java files as you'd prefer"
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