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XEC subbranch with S:V1264L via G25352C directly on Orf1a:A599T branch (69, 7 countries, mainly in Australia ) #2936

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Walde1nsamkeit opened this issue Apr 20, 2025 · 2 comments

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@Walde1nsamkeit
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Transferred from sars-cov-2-variants/lineage-proposals#2548
XEC> G2060A(Orf1a:A599T)> G25352C(S:V1264L)
Query: G2060A, C19716T, G25352C, -C829T, -C1426T, -T4579A, -G6533T (2 uncaught)
Sequences without 25352 coverage: EPI_ISL_19692233, EPI_ISL_19741285

Earliest sequence: 11-04 Sydney, New South Wales, Australia EPI_ISL_19549482
Latest sequence: 04-04 Sydney, New South Wales, Australia EPI_ISL_19831427
Regions detected: Australia 47, NZ 4, Spain 4, US 4, Canada 2, Denmark 2, Germany 1

https://nextstrain.org/fetch/genome.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_35bec2_4f44e0.json?c=country&label=id:node_7352747
Image

Sequences:
EPI_ISL_19549482, EPI_ISL_19585488, EPI_ISL_19601675,
EPI_ISL_19614475, EPI_ISL_19646375, EPI_ISL_19651779,
EPI_ISL_19670847, EPI_ISL_19674256, EPI_ISL_19674275,
EPI_ISL_19674279, EPI_ISL_19679665, EPI_ISL_19692233-19692234,
EPI_ISL_19697834, EPI_ISL_19697839-19697840, EPI_ISL_19710055,
EPI_ISL_19717388, EPI_ISL_19717391, EPI_ISL_19718551,
EPI_ISL_19724941, EPI_ISL_19735416, EPI_ISL_19735447,
EPI_ISL_19735552-19735553, EPI_ISL_19741285, EPI_ISL_19751917,
EPI_ISL_19757257, EPI_ISL_19761850, EPI_ISL_19762601,
EPI_ISL_19762617, EPI_ISL_19762627, EPI_ISL_19764087,
EPI_ISL_19770471, EPI_ISL_19775810, EPI_ISL_19775865,
EPI_ISL_19784463, EPI_ISL_19784465-19784467, EPI_ISL_19784580,
EPI_ISL_19786346, EPI_ISL_19786409, EPI_ISL_19786418,
EPI_ISL_19794949, EPI_ISL_19795383, EPI_ISL_19795870,
EPI_ISL_19796300, EPI_ISL_19811994, EPI_ISL_19813311,
EPI_ISL_19813368-19813369, EPI_ISL_19822206, EPI_ISL_19822472,
EPI_ISL_19822475, EPI_ISL_19822514, EPI_ISL_19822775,
EPI_ISL_19828167, EPI_ISL_19831320, EPI_ISL_19831331,
EPI_ISL_19831357, EPI_ISL_19831367, EPI_ISL_19831418,
EPI_ISL_19831427

@Walde1nsamkeit Walde1nsamkeit changed the title XEC subbranch with S:V1264L via G25352C directly on Orf1a:A599T branch (64, 7 countries, mainly in Australia ) XEC subbranch with S:V1264L via G25352C directly on Orf1a:A599T branch (66, 7 countries, mainly in Australia ) Apr 27, 2025
@Walde1nsamkeit Walde1nsamkeit changed the title XEC subbranch with S:V1264L via G25352C directly on Orf1a:A599T branch (66, 7 countries, mainly in Australia ) XEC subbranch with S:V1264L via G25352C directly on Orf1a:A599T branch (69, 7 countries, mainly in Australia ) May 7, 2025
@FedeGueli
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70

@xz-keg
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xz-keg commented May 14, 2025

designated XEC.37

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