Merge pull request #2966 from Walde1nsamkeit/patch-19

Update lineage_notes.txt

Author: AngieHinrichs

lineage_notes.txt

@@ -1132,10 +1132,10 @@ LB.1.2.1	Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T, from sars-cov-2-variant
 LB.1.2.2	Alias of B.1.1.529.2.86.1.1.9.2.1.2.2, S:T572I, C22075T, from sars-cov-2-variants/lineage-proposals#1792
 LB.1.2.3	Alias of B.1.1.529.2.86.1.1.9.2.1.2.3, S:F175L, ORF1a:I1568F, from sars-cov-2-variants/lineage-proposals#1730
 LB.1.3	Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I
-LB.1.3.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I, from sars-cov-2-variants/lineage-proposals#1620
+LB.1.3.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I, ORF7a:T28I, ORF1a:del84-85, from sars-cov-2-variants/lineage-proposals#1620
 NL.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.1, S:R190S, S:C1243F, from sars-cov-2-variants/lineage-proposals#1771
 NL.1.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.1.1, S:D111N, from #2806
-NL.2	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.2, ORF1a:T1429I, ORF1a:D1600N, USA
+NL.2	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.2, ORF1a:D1600N, after ORF1a:T1429I, on ORF1a:del82-86 branch, USA
 NL.2.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.2.1, S:H1101Y, C28603T
 NL.3	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.3, ORF1a:S2024L, Netherlands, Europe
 NL.3.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.3.1, S:A435S, from sars-cov-2-variants/lineage-proposals#2420
@@ -1155,8 +1155,8 @@ NL.10	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.10, C1387T, USA
 NL.11	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.11, ORF1a:T4129I
 NL.12	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.12, ORF1b:K2557R
 NL.13	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.13, S:I934V, S:T572I, from sars-cov-2-variants/lineage-proposals#2440
-NL.14	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.14, ORF1a:H2092Y
-NL.15	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.15, C9532T, C29635T
+NL.14	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.14, ORF1a:H2092Y, on ORF1a:del82-86 branch
+NL.15	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.15, C9532T, C29635T, after ORF1a:T1429I, on ORF1a:del82-86 branch
 NL.16	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1.16, ORF1b:M2024T, ORF3a:L41P
 LB.1.3.2	Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T
 MH.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I
@@ -1570,8 +1570,8 @@ LF.7.1.6	Alias of B.1.1.529.2.86.1.1.16.1.7.1.6, ORF1a:S994G, ORF3a:L85F
 LF.7.1.7	Alias of B.1.1.529.2.86.1.1.16.1.7.1.7, S:A475V, S:S680F, ORF1a:V2061F, from sars-cov-2-variants/lineage-proposals#2474
 LF.7.1.8	Alias of B.1.1.529.2.86.1.1.16.1.7.1.8, S:T572I
 LF.7.1.9	Alias of B.1.1.529.2.86.1.1.16.1.7.1.9, S:K478T (rev)
-LF.7.1.10	Alias of B.1.1.529.2.86.1.1.16.1.7.1.10, S:H445P, C16767T
-PL.1	Alias of B.1.1.529.2.86.1.1.16.1.7.1.10.1, S:A475V, C26873T
+LF.7.1.10	Alias of B.1.1.529.2.86.1.1.16.1.7.1.10, S:H445P, C16767T, the non-PL.1 branch gains M>I mutation in insertion sector(S:ins16IPLF)
+PL.1	Alias of B.1.1.529.2.86.1.1.16.1.7.1.10.1, S:A475V, C26873T (S:ins16MPLF not mutated)
 LF.7.2	Alias of B.1.1.529.2.86.1.1.16.1.7.2, T20799C
 LF.7.2.1	Alias of B.1.1.529.2.86.1.1.16.1.7.2.1, S:A475V, from sars-cov-2-variants/lineage-proposals#2067
 PC.1	Alias of B.1.1.529.2.86.1.1.16.1.7.2.1.1, S:N137K, from #2863