Merge pull request #153 from carpentries-lab/JOSE-review-2025

Updates for JOSE review process

Author: ewallace

.zenodo.json

@@ -0,0 +1,57 @@
+{
+    "creators": [
+        {
+            "name": "Zieliński, Tomasz",
+            "orcid": "0000-0002-0194-5706",
+            "affiliation": "School of Biological Sciences, The University of Edinburgh"
+        },
+        {
+            "name": "Romanowski, Andres",
+            "orcid": "0000-0003-0737-2408",
+            "affiliation": "School of Biological Sciences, The University of Edinburgh"
+        },
+        {
+            "name": "Wilson, Emma",
+            "orcid": "0000-0002-8100-7508",
+            "affiliation": "Centre for Clinical Brain Sciences, The University of Edinburgh"
+        },
+        {
+            "name": "Anderson, Felicity",
+            "orcid": "0000-0001-8778-6779",
+            "affiliation": "School of Biological Sciences, The University of Edinburgh"
+        },
+        {
+            "name": "Gountouna, Elvina",
+            "orcid": "0000-0001-7870-2780",
+            "affiliation": "MRC Human Genetics Unit, MRC Institute of Genetics and Cancer, The University of Edinburgh"
+        },
+        {
+            "name": "Mimault, Matthias",
+            "orcid": "0000-0003-1516-7332",
+            "affiliation": "The James Hutton Institute, Dundee"
+        },
+        {
+            "name": "Meynert, Alison",
+            "orcid": "0000-0001-5839-1751",
+            "affiliation": "MRC Human Genetics Unit, MRC Institute of Genetics and Cancer, The University of Edinburgh"
+        },
+        {
+            "name": "Wallace, Edward W.J.",
+            "orcid": "0000-0001-8025-6361",
+            "affiliation": "School of Biological Sciences, The University of Edinburgh"
+        }
+    ],
+    "description": "A 3 hour carpentries format lesson covering Good Enough Practices in Scientific Computing (Wilson et al., 2017): 'a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill'. The workshop is targeted at a broad audience of researchers who want to learn how to be more efficient and effective in their data analysis and computing, whatever their career stage.",
+    "doi": "https://doi.org/10.5281/zenodo.10783025",
+    "keywords": [
+        "data",
+        "computing",
+        "carpentry",
+        "novice"
+    ],
+    "license": {
+        "id": "CC-BY-4.0"
+    },
+    "title": "Good Enough Practices in Scientific Computing: A Learning Module for Researchers",
+    "upload_type": "lesson"
+}

README.md

@@ -1,6 +1,6 @@
 [![The Carpentries Lab Review Status](https://badges.carpentries-lab.org/24_status.svg)](https://github.com/carpentries-lab/reviews/issues/24)
 
-# Good Enough Practices in Scientific Computing
+# Good Enough Practices in Scientific Computing: A Learning Module for Researchers
 
 This repository contains a 3 hour carpentries format lesson covering [Good Enough Practices in Scientific Computing (Wilson et al., 2017)](https://doi.org/10.1371/journal.pcbi.1005510): "a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill".
 

paper.bib

@@ -1,4 +1,5 @@
 @article{wilson2017good,
+  doi = {10.1371/journal.pcbi.1005510},
   title={Good enough practices in scientific computing},
   author={Wilson, Greg and Bryan, Jennifer and Cranston, Karen and Kitzes, Justin and Nederbragt, Lex and Teal, Tracy K},
   journal={PLoS computational biology},
@@ -10,6 +11,7 @@ @article{wilson2017good
 }
 
 @article{williams2023optimizing,
+  doi = {10.1101/2023.03.10.531570},
   title={Optimizing Short-format Training: an International Consensus on Effective, Inclusive, and Career-spanning Professional Development in the Life Sciences and Beyond},
   author={Williams, Jason J and Tractenberg, Rochelle E and Batut, B{\'e}r{\'e}nice and Becker, Erin A and Brown, Anne M and Burke, Melissa L and Busby, Ben and Cooch, Nisha K and Dillman, Allissa A and Donovan, Samuel S and others},
   journal={bioRxiv},

paper.md

@@ -65,7 +65,7 @@ The module teaches "good enough practices" that are near-universally useful for
 These practices encompass data management, software and programming, collaborating with colleagues, organizing projects, keeping track of changes, and writing manuscripts.
 Good enough practices rely on a shared set of principles that span these areas: planning, modular organization, names, and documentation.
 The lesson is in The Carpentries format and the materials are open-source and hosted on GitHub by The Carpentries Lab.
-The lesson is visible at https://carpentries-lab.github.io/good-enough-practices/.
+The lesson is visible at <https://carpentries-lab.github.io/good-enough-practices/>.
 
 
 
@@ -142,7 +142,7 @@ We thank the Edinburgh Carpentries community, the Ed-DaSH team, and the global C
 We thank reviewers Lex Nederbragt and Heidi Seibold for their helpful comments that improved the lesson.
 We thank Toby Hodges for extensive help, advice, and support.
 This work was supported by UK Research and Innovation via the Ed-DASH project (grant number MR/V039075/1).
-E.W.J.W. is supported by Wellcome grant 208779/Z/17/Z.
+E.W.J.W. was supported by Wellcome Trust grant 208779/Z/17/Z.
 
 
 # References