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Upgrade and debugging
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.pre-commit-config.yaml

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repos:
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- repo: https://github.com/biobuddies/helicopyter
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rev: v2024.39.1
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rev: v2025.03.01
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hooks:
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- id: codespell
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args:

Dockerfile

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# hadolint ignore=DL3008,SC2046
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RUN --mount=type=cache,target=/var/cache/apt \
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--mount=type=bind,source=includes.sh,target=includes.sh \
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rm /etc/apt/apt.conf.d/docker-clean \
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set -euxo pipefail \
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&& rm /etc/apt/apt.conf.d/docker-clean \
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&& echo 'Binary::apt::APT::Keep-Downloaded-Packages "1";' > /etc/apt/apt.conf.d/99cache \
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&& apt-get update \
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&& apt-get install -qq --no-install-recommends --yes nodejs npm \

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