Merge pull request #387 from awslabs/hughcars/dependency-update

Update dependencies

Author: hughcars

.github/workflows/build-and-test-linux.yml

@@ -132,7 +132,7 @@ jobs:
           math-libs: armpl
           build-shared: shared
           with-64bit-int: int32
-          with-openmp: openmp
+          with-openmp: serial # openmp -- mumps 5.8.0 introduces hang possibility
           with-eigensolver: arpack
           with-solver: mumps
         - arch: arm

CHANGELOG.md

@@ -105,6 +105,9 @@ The format of this changelog is based on
   - Refactor `PostOperator` usage of `Measurement` to be entirely non-dimensional, until
     `PostOperatorCSV` which dimensionalizes all measurements before writing to file. Reduces
     the risk of mixed unit bugs throughout `PostOperator`.
+  - Fix bug in using `"MakeSimplex"` which would cause undefined behaviour for higher order
+    meshes.
+  - Fix bug when combining OpenMP and GPU builds in reduction operations over `Vector`.
 
 ## [0.13.0] - 2024-05-20
 

cmake/ExternalGitTags.cmake

@@ -34,7 +34,7 @@ set(EXTERN_BUTTERFLYPACK_GIT_BRANCH
   "Git branch for external ButterflyPACK build"
 )
 set(EXTERN_BUTTERFLYPACK_GIT_TAG
-  "cbbee2999ea8ec82a1f9d06320522db22d5d3ad2" CACHE STRING
+  "f5ca3672bc2ddc36b9e59e20f82749f92efe33d7" CACHE STRING
   "Git tag for external ButterflyPACK build"
 )
 
@@ -62,7 +62,7 @@ set(EXTERN_HYPRE_GIT_BRANCH
   "Git branch for external HYPRE build"
 )
 set(EXTERN_HYPRE_GIT_TAG
-  "4f6f6784f47976d6e1f2e4750a1d02f7cb56e127" CACHE STRING
+  "825b2e42af56f6f27bc00756395651823d3d7857" CACHE STRING
   "Git tag for external HYPRE build"
 )
 
@@ -76,7 +76,7 @@ set(EXTERN_LIBCEED_GIT_BRANCH
   "Git branch for external libCEED build"
 )
 set(EXTERN_LIBCEED_GIT_TAG
-  "4db02c8f89970d9e4874124af1a6d3e1d3666a88" CACHE STRING
+  "204f3be0a8a44f14c6b90cf1319bc5c5bd195020" CACHE STRING
   "Git tag for external libCEED build"
 )
 
@@ -90,7 +90,7 @@ set(EXTERN_LIBXSMM_GIT_BRANCH
   "Git branch for external LIBXSMM build"
 )
 set(EXTERN_LIBXSMM_GIT_TAG
-  "6ea2c101ee6774a240ae6b4fcd8728d4a608e3cc" CACHE STRING
+  "c77b70f74cae33f2779a96be70816bd3d03d5e52" CACHE STRING
   "Git tag for external LIBXSMM build"
 )
 
@@ -132,7 +132,7 @@ set(EXTERN_MFEM_GIT_BRANCH
   "Git branch for external MFEM build"
 )
 set(EXTERN_MFEM_GIT_TAG
-  "9f945a5863407bdb5e1212465687ba09a49bbd7e" CACHE STRING
+  "e9782cf4374cc05e4db1da45fa9d621e3ac9df27" CACHE STRING
   "Git tag for external MFEM build"
 )
 
@@ -146,7 +146,7 @@ set(EXTERN_MUMPS_GIT_BRANCH
   "Git branch for external MUMPS build"
 )
 set(EXTERN_MUMPS_GIT_TAG
-  "1cfd19699702f9a64ff5d45827d6025ff5c3873a" CACHE STRING
+  "da2813d9a90c7e19dd23612be34931c73f5916ef" CACHE STRING
   "Git tag for external MUMPS build"
 )
 
@@ -174,7 +174,7 @@ set(EXTERN_PETSC_GIT_BRANCH
   "Git branch for external PETSc build"
 )
 set(EXTERN_PETSC_GIT_TAG
-  "226f8a8a5081bc6ad7227cd631662400f0d6e2a0" CACHE STRING
+  "a8f5390672dbe02ceb018f69e374804f28373256" CACHE STRING
   "Git tag for external PETSc build"
 )
 
@@ -188,7 +188,7 @@ set(EXTERN_SCALAPACK_GIT_BRANCH
   "Git branch for external ScaLAPACK build"
 )
 set(EXTERN_SCALAPACK_GIT_TAG
-  "0e8767285b7a201c7b1ff34d2c2bb009534145df" CACHE STRING
+  "95f848141926a87f23bdde0da2bef77bf54fdc22" CACHE STRING
   "Git tag for external ScaLAPACK build"
 )
 
@@ -202,7 +202,7 @@ set(EXTERN_SLEPC_GIT_BRANCH
   "Git branch for external SLEPc build"
 )
 set(EXTERN_SLEPC_GIT_TAG
-  "94cd514ee23a6958ceca39b49c8ef779eb18da6c" CACHE STRING
+  "7302ce13e82313053b59cc53bfc7a43941693f3a" CACHE STRING
   "Git tag for external SLEPc build"
 )
 
@@ -216,7 +216,7 @@ set(EXTERN_STRUMPACK_GIT_BRANCH
   "Git branch for external STRUMPACK build"
 )
 set(EXTERN_STRUMPACK_GIT_TAG
-  "f7aeea36325d9dfe60572858599a26575daf15d1" CACHE STRING
+  "ecbff2f7e4f374efa29771045b5d92614a4171d1" CACHE STRING
   "Git tag for external STRUMPACK build"
 )
 
@@ -230,7 +230,7 @@ set(EXTERN_SUPERLU_GIT_BRANCH
   "Git branch for external SuperLU_DIST build"
 )
 set(EXTERN_SUPERLU_GIT_TAG
-  "829615e35d6c4627a941e4ec4f60a7fed21bc2c4" CACHE STRING
+  "80b7ae1dfca8a63b3d8494441bbcc9d79809921b" CACHE STRING
   "Git tag for external SuperLU_DIST build"
 )
 
@@ -244,7 +244,7 @@ set(EXTERN_ZFP_GIT_BRANCH
   "Git branch for external ZFP build"
 )
 set(EXTERN_ZFP_GIT_TAG
-  "7d1e3a21047a976599b562b3bbd53b1f34348f1a" CACHE STRING
+  "03cb211c7bc76ec6508a1538ceb8c8ade89ebd3e" CACHE STRING
   "Git tag for external ZFP build"
 )
 
@@ -276,6 +276,6 @@ set(EXTERN_SUNDIALS_GIT_BRANCH
   "Git branch for external SUNDIALS build"
 )
 set(EXTERN_SUNDIALS_GIT_TAG
-  "e941546af1a5b5e492dcac0a1872540e9961c556" CACHE STRING
+  "c3ff4663573953facb33eb026dd5d80444ecedc8" CACHE STRING
   "Git tag for external SUNDIALS build"
 )

cmake/ExternalMFEM.cmake

@@ -389,11 +389,11 @@ message(STATUS "MFEM_OPTIONS: ${MFEM_OPTIONS_PRINT}")
 
 # A number of patches to MFEM for our use cases
 set(MFEM_PATCH_FILES
-  "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_mfem_device_fixes.diff"
   "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_mesh_vis_dev.diff"
   "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_par_tet_mesh_fix_dev.diff"
   "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_gmsh_parser_performance.diff"
-  "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_ho_make_simplicial_dev.diff"
+  "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_missing_host_read_write_fix.diff"
+  "${CMAKE_SOURCE_DIR}/extern/patch/mfem/patch_gpu_omp.diff"
 )
 
 include(ExternalProject)