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README.md

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@@ -33,7 +33,7 @@ There are many ways to approach this problem, and major algorithmic steps that a
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Dimension reduction sometimes relies on knowledge of important marker genes and sometimes uses the full gene expression matrix.
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The trajectory through the low dimensional space can be identified using graph algorithms (e.g., minimum spanning tree or shortest path), principal curves, or probabilistic models (e.g., Gaussian process).
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[Bacher and Kendziorski 2016](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0927-y), [Trapnell 2015](http://genome.cshlp.org/content/25/10/1491.full), [Tanay and Regev 2017](http://www.nature.com/nature/journal/v541/n7637/full/nature21350.html), [Moon et al. 2017](https://doi.org/10.1016/j.coisb.2017.12.008), [Tritschler et al. 2019](https://doi.org/10.1242/dev.170506), [Weiler et al. 2021](https://doi.org/10.1101/2021.12.22.473434), [Ding et al. 2022](https://doi.org/10.1038/s41576-021-00444-7), and [Pan and Zhang 2023](https://pmc.ncbi.nlm.nih.gov/articles/PMC10937865/) provide a more comprehensive overview of single-cell RNA-seq and the pseudotime estimation problem.
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[Bacher and Kendziorski 2016](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0927-y), [Trapnell 2015](http://genome.cshlp.org/content/25/10/1491.full), [Tanay and Regev 2017](http://www.nature.com/nature/journal/v541/n7637/full/nature21350.html), [Moon et al. 2017](https://doi.org/10.1016/j.coisb.2017.12.008), [Tritschler et al. 2019](https://doi.org/10.1242/dev.170506), [Weiler et al. 2021](https://doi.org/10.1101/2021.12.22.473434), [Ding et al. 2022](https://doi.org/10.1038/s41576-021-00444-7), [Pan and Zhang 2023](https://pmc.ncbi.nlm.nih.gov/articles/PMC10937865/), and [Hutton and Meyer 2025](https://doi.org/10.48550/arXiv.2502.09354) provide a more comprehensive overview of single-cell RNA-seq and the pseudotime estimation problem.
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[Cannoodt et al. 2016](http://onlinelibrary.wiley.com/wol1/doi/10.1002/eji.201646347/abstract) reviews pseudotime inference algorithms.
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[Pablo Cordero's blog post](http://hyperparameter.space/blog/a-single-cell-journey-from-mechanistic-to-descriptive-modeling-and-back-again/) discusses why it is hard to recover the correct dynamics of a system from single-cell data.
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For more general lists of methods for single-cell RNA-seq see [seandavi/awesome-single-cell](https://github.com/seandavi/awesome-single-cell) and [scRNA-tools](https://www.scrna-tools.org/).

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