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PycoQC issue: Empty graph produced #149

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dlbowie0 opened this issue May 16, 2024 · 0 comments
Open

PycoQC issue: Empty graph produced #149

dlbowie0 opened this issue May 16, 2024 · 0 comments

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@dlbowie0
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command line used : pycoQC -f seq_summary.txt -a goi.bam -o output_pycoqc.html

After executing this ommand line in the pipeline, two of all the graphs produced by pycoQC are empty:
image
image

When I checked the .command.err file, the following error was stated:
image

Numpy version installed == 1.26.4

Below you can find where in the pycoQC pcode `np.int' is stated:

z = np.ones((len(bins), n_channels), dtype=np.int)

z = np.ones((len(bins), n_channels), dtype=np.int)

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