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Implement BRI instead of pysam for BAM reading #107

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a-slide opened this issue Dec 18, 2019 · 0 comments

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a-slide commented Dec 18, 2019

The current pysam method load the entire bam file in memory.
Using Jared's bri package would allow to load reads one at the time => https://github.com/jts/bri
Using the ONT python wrapper is probably the easiest way to go: https://github.com/nanoporetech/bripy

a-slide added the enhancement label

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