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Fix: Remove compressor arguments from ZarrAvgMerger for zarr>=3.0.0 compatibility
Signed-off-by: kolasaniv1996 <[email protected]>
1 parent 6b705ea commit b09f93a

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+3
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monai/inferers/merger.py

Lines changed: 3 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -237,9 +237,7 @@ def __init__(
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store: zarr.storage.Store | str = "merged.zarr", # type: ignore
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value_store: zarr.storage.Store | str | None = None, # type: ignore
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count_store: zarr.storage.Store | str | None = None, # type: ignore
240-
compressor: str | None = None,
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value_compressor: str | None = None,
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count_compressor: str | None = None,
240+
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chunks: Sequence[int] | bool = True,
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thread_locking: bool = True,
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) -> None:
@@ -267,30 +265,25 @@ def __init__(
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self.value_store = zarr.storage.TempStore() if value_store is None else value_store # type: ignore
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self.count_store = zarr.storage.TempStore() if count_store is None else count_store # type: ignore
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self.chunks = chunks
270-
self.compressor = compressor
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self.value_compressor = value_compressor
272-
self.count_compressor = count_compressor
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self.output = zarr.empty(
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shape=self.merged_shape,
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chunks=self.chunks,
276-
dtype=self.output_dtype,
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compressor=None,
272+
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store=self.store,
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overwrite=True,
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)
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self.values = zarr.zeros(
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shape=self.merged_shape,
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chunks=self.chunks,
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dtype=self.value_dtype,
285-
compressor=None,
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store=self.value_store,
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overwrite=True,
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)
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self.counts = zarr.zeros(
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shape=self.merged_shape,
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chunks=self.chunks,
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dtype=self.count_dtype,
293-
compressor=None,
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store=self.count_store,
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overwrite=True,
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)

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