MC-kit
diff --git a/‎Untitled.ipynb
-1,197 b/‎Untitled.ipynb
-1,197
diff --git a/‎atlas.py
+17 b/‎atlas.py
+17
diff --git a/‎computational.py
+17 b/‎computational.py
+17
diff --git a/‎configuration.py
+17 b/‎configuration.py
+17
diff --git a/‎docs/source/_build/html/.doctrees/environment.pickle
-4.1 KB b/‎docs/source/_build/html/.doctrees/environment.pickle
-4.1 KB
diff --git a/‎docs/source/_build/html/.doctrees/publications.doctree
363 Bytes b/‎docs/source/_build/html/.doctrees/publications.doctree
363 Bytes
diff --git a/‎docs/source/_build/html/.doctrees/usage/benchmarks.doctree
370 Bytes b/‎docs/source/_build/html/.doctrees/usage/benchmarks.doctree
370 Bytes
diff --git a/‎docs/source/_build/html/_sources/publications.rst.txt
+1-1 b/‎docs/source/_build/html/_sources/publications.rst.txt
+1-1
diff --git a/‎docs/source/_build/html/_sources/usage/benchmarks.rst.txt
+1-1 b/‎docs/source/_build/html/_sources/usage/benchmarks.rst.txt
+1-1
diff --git a/‎docs/source/_build/html/objects.inv
-19 Bytes b/‎docs/source/_build/html/objects.inv
-19 Bytes
diff --git a/‎docs/source/_build/html/publications.html
+5-2 b/‎docs/source/_build/html/publications.html
+5-2
diff --git a/‎docs/source/_build/html/searchindex.js
+1-1 b/‎docs/source/_build/html/searchindex.js
+1-1
diff --git a/‎docs/source/_build/html/usage/benchmarks.html
+1-1 b/‎docs/source/_build/html/usage/benchmarks.html
+1-1
diff --git a/‎docs/source/publications.rst
+1-1 b/‎docs/source/publications.rst
+1-1
diff --git a/‎docs/source/usage/benchmarks.rst
+1-1 b/‎docs/source/usage/benchmarks.rst
+1-1
diff --git a/‎excel_support.py
+16-1 b/‎excel_support.py
+16-1
diff --git a/‎expoutput.py
+17 b/‎expoutput.py
+17
diff --git a/‎gui.py
+17 b/‎gui.py
+17
diff --git a/‎inputfile.py
+17 b/‎inputfile.py
+17
diff --git a/‎libmanager.py
+17 b/‎libmanager.py
+17
diff --git a/‎main.py
+17 b/‎main.py
+17
diff --git a/‎matreader.py
+17 b/‎matreader.py
+17
diff --git a/‎meshtal.py
+17 b/‎meshtal.py
+17
diff --git a/‎output.py
+17 b/‎output.py
+17
diff --git a/‎outputFile.py
+17 b/‎outputFile.py
+17
@@ -3,6 +3,23 @@
 Created on Wed Jan 15 14:30:18 2020
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import docx
 import win32com.client
 
@@ -3,6 +3,23 @@
 Created on Mon Oct 28 16:52:36 2019
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import testrun
 import os
 
@@ -3,6 +3,23 @@
 Created on Wed Oct 30 16:52:32 2019
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import pandas as pd
 import datetime
 
@@ -18,7 +18,7 @@ Benchmarks Related Publications
 * A. Milocco, A. Trkov and I. A. Kodeli, 2010, "The OKTAVIAN TOF experiments in SINBAD: Evaluation of the
   experimental uncertainties", *Annals of Nuclear Energy*, **37** 443-449
 * I.Kodeli, E. Sartori and B. Kirk, “SINBAD - Shielding Benchmark Experiments - Status and Planned Activities”,
-  Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
+  *Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
   Carlsbad, New Mexico (April 3-6, 2006)
 * D. Leichtle, B. Colling, M. Fabbri, R. Juarez, M. Loughlin,
   R. Pampin, E. Polunovskiy, A. Serikov, A. Turner and L. Bertalot, 2018,
 
@@ -150,5 +150,5 @@ by the RSICC and jointly mantained with the NEA data bank.
     * A. Milocco, A. Trkov and I. A. Kodeli, 2010, "The OKTAVIAN TOF experiments in SINBAD: Evaluation of the
       experimental uncertainties", *Annals of Nuclear Energy*, **37** 443-449
     * I.Kodeli, E. Sartori and B. Kirk, “SINBAD - Shielding Benchmark Experiments - Status and Planned Activities”,
-      Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
+      *Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
       Carlsbad, New Mexico (April 3-6, 2006)
@@ -41,6 +41,7 @@
 
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="Introduction" href="dev/intro.html" />
     <link rel="prev" title="Contributors" href="contributors.html" /> 
 </head>
 
@@ -96,6 +97,7 @@
 <li class="toctree-l1"><a class="reference internal" href="usage/folders.html">Folder Structure</a></li>
 <li class="toctree-l1"><a class="reference internal" href="usage/configuration.html">Configuration</a></li>
 <li class="toctree-l1"><a class="reference internal" href="usage/menu.html">Usage</a></li>
+<li class="toctree-l1"><a class="reference internal" href="usage/benchmarks.html">Default Benchmarks</a></li>
 <li class="toctree-l1"><a class="reference internal" href="usage/postprocessing.html">Post-Processing Gallery</a></li>
 <li class="toctree-l1"><a class="reference internal" href="usage/utilities.html">Utilities</a></li>
 <li class="toctree-l1"><a class="reference internal" href="usage/tipstricks.html">Tips &amp; Tricks</a></li>
@@ -114,7 +116,7 @@
 </ul>
 <p class="caption"><span class="caption-text">JADE Developer Guide (TBD):</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="LICENSE.html">License</a></li>
+<li class="toctree-l1"><a class="reference internal" href="dev/intro.html">Introduction</a></li>
 </ul>
 
 
@@ -203,7 +205,7 @@ <h2>Benchmarks Related Publications<a class="headerlink" href="#benchmarks-relat
 <li><p>A. Milocco, A. Trkov and I. A. Kodeli, 2010, “The OKTAVIAN TOF experiments in SINBAD: Evaluation of the
 experimental uncertainties”, <em>Annals of Nuclear Energy</em>, <strong>37</strong> 443-449</p></li>
 <li><p>I.Kodeli, E. Sartori and B. Kirk, “SINBAD - Shielding Benchmark Experiments - Status and Planned Activities”,
-Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
+<em>Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division</em>,
 Carlsbad, New Mexico (April 3-6, 2006)</p></li>
 <li><p>D. Leichtle, B. Colling, M. Fabbri, R. Juarez, M. Loughlin,
 R. Pampin, E. Polunovskiy, A. Serikov, A. Turner and L. Bertalot, 2018,
@@ -224,6 +226,7 @@ <h2>Miscellaneous<a class="headerlink" href="#miscellaneous" title="Permalink to
           </div>
           <footer>
     <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
+        <a href="dev/intro.html" class="btn btn-neutral float-right" title="Introduction" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
         <a href="contributors.html" class="btn btn-neutral float-left" title="Contributors" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
     </div>
 
 
@@ -332,7 +332,7 @@ <h3>Oktavian<a class="headerlink" href="#oktavian" title="Permalink to this head
 <li><p>A. Milocco, A. Trkov and I. A. Kodeli, 2010, “The OKTAVIAN TOF experiments in SINBAD: Evaluation of the
 experimental uncertainties”, <em>Annals of Nuclear Energy</em>, <strong>37</strong> 443-449</p></li>
 <li><p>I.Kodeli, E. Sartori and B. Kirk, “SINBAD - Shielding Benchmark Experiments - Status and Planned Activities”,
-Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
+<em>Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division</em>,
 Carlsbad, New Mexico (April 3-6, 2006)</p></li>
 </ul>
 </div>
 
@@ -18,7 +18,7 @@ Benchmarks Related Publications
 * A. Milocco, A. Trkov and I. A. Kodeli, 2010, "The OKTAVIAN TOF experiments in SINBAD: Evaluation of the
   experimental uncertainties", *Annals of Nuclear Energy*, **37** 443-449
 * I.Kodeli, E. Sartori and B. Kirk, “SINBAD - Shielding Benchmark Experiments - Status and Planned Activities”,
-  Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
+  *Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
   Carlsbad, New Mexico (April 3-6, 2006)
 * D. Leichtle, B. Colling, M. Fabbri, R. Juarez, M. Loughlin,
   R. Pampin, E. Polunovskiy, A. Serikov, A. Turner and L. Bertalot, 2018,
 
@@ -150,5 +150,5 @@ by the RSICC and jointly mantained with the NEA data bank.
     * A. Milocco, A. Trkov and I. A. Kodeli, 2010, "The OKTAVIAN TOF experiments in SINBAD: Evaluation of the
       experimental uncertainties", *Annals of Nuclear Energy*, **37** 443-449
     * I.Kodeli, E. Sartori and B. Kirk, “SINBAD - Shielding Benchmark Experiments - Status and Planned Activities”,
-      Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
+      *Proceedings of the ANS 14th Biennial Topical Meeting of Radiation Protection and Shielding Division*,
       Carlsbad, New Mexico (April 3-6, 2006)
@@ -4,7 +4,22 @@
 
 @author: Davide Laghi
 
-Excel support
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 # from copy import copy
 # import openpyxl
 
@@ -3,6 +3,23 @@
 Created on Wed Oct 21 17:18:07 2020
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import pandas as pd
 import numpy as np
 
@@ -3,6 +3,23 @@
 Created on Wed Oct 30 09:24:06 2019
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import os
 import sys
 
@@ -3,6 +3,23 @@
 Created on Mon Nov  4 17:21:24 2019
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import re
 import matreader as mat
 
@@ -3,6 +3,23 @@
 Created on Mon Oct 28 17:00:45 2019
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import xsdirpyne as xs
 import pandas as pd
 
@@ -3,6 +3,23 @@
 Created on Wed Oct 30 11:57:57 2019
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import gui
 import configuration as cnf
 
@@ -5,6 +5,23 @@
 @author: Davide laghi
 
 Support classes for MCNP material card reader/writer
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 # -------------------------------------
 #         == IMPORTS ==
 
@@ -3,6 +3,23 @@
 Created on Thu May 20 12:22:30 2021
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import os
 import re
 
@@ -3,6 +3,23 @@
 Created on Thu Jan  2 10:36:38 2020
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 
 import MCTAL_READER as mtal
 
@@ -3,6 +3,23 @@
 Created on Wed May  6 10:15:54 2020
 
 @author: Davide Laghi
+
+Copyright 2021, the JADE Development Team. All rights reserved.
+
+This file is part of JADE.
+
+JADE is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+JADE is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with JADE.  If not, see <http://www.gnu.org/licenses/>.
 """
 import os
 import re